| Apr 30, 2018 |
BMAA1548
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system outer rod/major needle component BsaL (T3SS-3). New gene name synonym: sctF. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 16631790. New PubMed ID: 17617421. New PubMed ID: 18491382. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1548.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1545
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system outer membrane ring protein / secretin BsaO (T3SS-3). New gene name synonym: sctC. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25591178. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1544
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system outer membrane ring protein / secretin BsaO (T3SS-3). New gene name synonym: sctC. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25591178. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1545.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1528
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system needle tip protein BipD (T3SS-3). New gene name synonym: sctA. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1529.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1529
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system needle tip protein BipD (T3SS-3). New gene name synonym: sctA. New product name confidence: Class 1. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1549
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system inner rod/minor needle component BsaK (T3SS-3). New gene name synonym: sctI. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1549
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner rod/minor needle component BsaK (T3SS-3). New gene name synonym: sctI. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1549.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1633
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner rod component (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1623.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1632
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner rod component (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1622.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1547
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system inner membrane ring component BsaM (T3SS-3). New gene name synonym: sctD. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 24884837. New PubMed ID: 15528446. New PubMed ID: 10944190. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1547
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane ring component BsaM (T3SS-3). New gene name synonym: sctD. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 24884837. New PubMed ID: 15528446. New PubMed ID: 10944190. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1547.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1550
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane ring component (T3SS-3). New gene name synonym: sctJ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1550.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1627
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane export apparatus protein SctS (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1616.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1628
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane export apparatus protein SctR (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1617.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1535
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system inner membrane export apparatus protein BsaY (T3SS-3). New gene name synonym: sctT. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1534
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane export apparatus protein BsaY (T3SS-3). New gene name synonym: sctT. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1535.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1536
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system inner membrane export apparatus protein BsaX (T3SS-3). New gene name synonym: sctS. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1535
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane export apparatus protein BsaX (T3SS-3). New gene name synonym: sctS. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1536.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1537
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system inner membrane export apparatus protein BsaW (T3SS-3). New gene name synonym: sctR. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1536
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system inner membrane export apparatus protein BsaW (T3SS-3). New gene name synonym: sctR. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1537.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1544
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system gatekeeper protein BsaP (T3SS-3). New gene name synonym: sctW. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1543
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system gatekeeper protein BsaP (T3SS-3). New gene name synonym: sctW. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1544.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1630
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system export apparatus protein SctV (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1620.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1534
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system export apparatus protein BsaZ (T3SS-3). New gene name synonym: sctU. New PubMed ID: 28664152. New PubMed ID: 18443088. New PubMed ID: 25635268. New PubMed ID: 12410823. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1533
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system export apparatus protein BsaZ (T3SS-3). New gene name synonym: sctU. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18443088. New PubMed ID: 25635268. New PubMed ID: 12410823. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1534.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1543
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system export apparatus protein BsaQ (T3SS-3). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18654761. New PubMed ID: 16153244. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1542
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system export apparatus protein BsaQ (T3SS-3). New gene name synonym: sctV. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 18654761. New PubMed ID: 16153244. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1543.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1524
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system effector protein BopA (T3SS-3). New PubMed ID: 18483470. New PubMed ID: 28664150. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1521
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system effector protein BopA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 18483470. New PubMed ID: 28664150. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1524.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1524
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system effector protein BapC (T3SS-3). New product name confidence: Class 2. New subcellular localization: Extracellular (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization cross-ref: BGD:BPSS1526. New subcellular localization PMID: 26624293. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1526.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1526
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system effector protein BapC (T3SS-3). New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000002. New subcellular localization PMID: 26624293. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1516
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system effector BopC (T3SS-3). New PubMed ID: 25635268. New PubMed ID: 22092682. New PubMed ID: 21670170. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. bopC is also necessary for T6SS-1 function in macrophages (PMID: 21670170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1629
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system cytoplasmic ring protein SctQ (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1618.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1538
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system cystoplasmic ring protein BsaV (T3SS-3). New gene name synonym: sctQ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1537
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system cystoplasmic ring protein BsaV (T3SS-3). New gene name synonym: sctQ. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1538.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1622
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system chaperone protein BpsaB2 (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1611.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1637
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system ATPase SctN (T3SS-2). New product name confidence: Class 2. New PubMed ID: 15621426. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-2 locus found in B. malllei..Annotation transferred from: BGD:BPSS1627.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1551
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system ATPase co-factor OrgA (T3SS-3). New gene name synonym: sctK. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1551
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system ATPase co-factor OrgA (T3SS-3). New gene name synonym: sctK. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1551.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1541
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion system ATPase BsaS (T3SS-3). New PubMed ID: 28664152. New PubMed ID: 25605762. New PubMed ID: 20345664. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1540
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion system ATPase BsaS (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25605762. New PubMed ID: 20345664. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1541.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1533
|
Burkholderia pseudomallei
K96243 |
New product name: type III secretion chaperone protein BicA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 20345664. New PubMed ID: 25085508. New PubMed ID: 27997726. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. The B. pseudomallei bicA gene is able to partially complement a Salmonella sicA mutant, supporting a homologous function as chaperone (PMID:27997726).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1532
|
Burkholderia mallei
ATCC 23344 |
New product name: type III secretion chaperone protein BicA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 20345664. New PubMed ID: 25085508. New PubMed ID: 27997726. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1533.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1502
|
Burkholderia pseudomallei
K96243 |
New product name: TssH-5. New product name confidence: Class 1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1531
|
Burkholderia pseudomallei
K96243 |
New product name: translocator protein BipC (T3SS-3). New gene name synonym: sctB. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27634329. New PubMed ID: 28028452. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1530
|
Burkholderia mallei
ATCC 23344 |
New product name: translocator protein BipC (T3SS-3). New gene name synonym: sctB. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27634329. New PubMed ID: 28028452. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1531.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1532
|
Burkholderia pseudomallei
K96243 |
New product name: translocator protein BipB (T3SS-3). New gene name synonym: sctE. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1531
|
Burkholderia mallei
ATCC 23344 |
New product name: translocator protein BipB (T3SS-3). New gene name synonym: sctE. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1532.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAM1868
|
Burkholderia cenocepacia
J2315 |
New product name: transcriptional regulator CepR. New product name confidence: Class 1. New homology: 99% identity to CepR[B. cepacia K56-2]. New evidence reference (PMID): 11402012.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 22, 2009 |
BCAL1656
|
Burkholderia cenocepacia
J2315 |
New product name: transcription factor SsuR. New product name confidence: Class 1. New evidence reference (PMID): 16997956.
|
Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
|
| Apr 22, 2009 |
BCAL2686
|
Burkholderia cenocepacia
J2315 |
New product name: transcription factor CysB. New product name confidence: Class 1. New evidence reference (PMID): 16997956.
|
Literature review. Hryniewicz, M. M. Polish academy of Sciences, Warsaw, Poland
|
| Apr 30, 2018 |
WJ59_RS21240
|
Burkholderia gladioli
MSMB1756 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
LA03_RS18415
|
Burkholderia gladioli
UCD-UG_CHAPALOTE |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
D590_RS24420
|
Burkholderia gladioli
3848s-5 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bgla_1g01370
|
Burkholderia gladioli
BSR3 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
XF14_RS22130
|
Burkholderia gladioli
SN82F6 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BM43_RS24370
|
Burkholderia gladioli
ATCC 10248 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BGL01S_RS20465
|
Burkholderia gladioli
NBRC 13700 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 2. New subcellular localization: Host Associated (Class 2). New subcellular localization evidence code (ECO): ECO:0000250. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment: .Annotation transferred from: GenBank:AOO34660.1.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
ACI79_RS06660
|
Burkholderia gladioli
NGJ1 |
New product name: T3SS-secreted prophage tail-like protein. New product name confidence: Class 1. New subcellular localization: Host Associated (Class 1). New subcellular localization evidence code (ECO): ECO:0000112. New subcellular localization PMID: 28864820. New PubMed ID: 28864820. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0267
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-6. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-6 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0131
|
Burkholderia thailandensis
E264 ATCC 700388 |
New product name: Rhs-2. New product name confidence: Class 2. New PubMed ID: 17660433. New PubMed ID: 22007185. New PubMed ID: 17555434. New PubMed ID: 20865170. New comment: This gene is part of cluster known as the type VI secretion system gene cluster tss-2 based on naming convention used for B. pseudomallei described in PMID:17660433, however unlike B. pseudomallei, the numbers following the vgrG and hcp gene match the cluster number (PMID:20865170).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1356
|
Burkholderia pseudomallei
K96243 |
New product name: regulatory protein. New product name confidence: Class 1. New PubMed ID: 24927285. New PubMed ID: 22354666. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1530
|
Burkholderia pseudomallei
K96243 |
New product name: regulatory protein BprA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1529
|
Burkholderia mallei
ATCC 23344 |
New product name: regulatory protein BprA (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1530.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1520
|
Burkholderia pseudomallei
K96243 |
New product name: regulator of type VI secretion system-1 BprC . New PubMed ID: 20345664. New PubMed ID: 21670170. New PubMed ID: 25111708. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. In a bprC mutant, the expression of virA and virG was downregulated to 30% and 42%, respectively, whereas tssA expression was decreased to 4% of wild-type level (PMID:20345664).
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1554
|
Burkholderia pseudomallei
K96243 |
New product name: regulator of type III secretion system-3 (T3SS-3) BprQ. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 27147217. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1553
|
Burkholderia pseudomallei
K96243 |
New product name: regulator of type III secretion system-3 (T3SS-3) BprP. New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BMAA1545
|
Burkholderia mallei
ATCC 23344 |
New product name: regulator of type III secretion system effector proteins BsaN (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New PubMed ID: 20345664. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1546.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1521
|
Burkholderia pseudomallei
K96243 |
New product name: regulator and type III secretion system effector protein BbrD (T3SS-3). New PubMed ID: 25111708. New PubMed ID: 28664152. New PubMed ID: 25635268. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1517
|
Burkholderia pseudomallei
K96243 |
New product name: putative type III secretion system chaperone protein (T3SS-3). New PubMed ID: 22092682. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 29, 2010 |
BCAS0333
|
Burkholderia cenocepacia
J2315 |
New product name: putative siderophore receptor. New product name confidence: Class 3. Dropped gene name: orbA.
|
Pamela A. Sokol, University of Calgary
|
| Sep 15, 2008 |
Bcep18194_B2865
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 41% identity and 54% similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcep18194_C7399
|
|
New product name: putative protein tyrosine phosphatase. New product name confidence: Class 3. New homology: 35% identity and 55 % similarity to BceD [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcep18194_C7398
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 37% identity and 56 similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcep18194_B2866
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 36% identity and 54 % similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Sep 15, 2008 |
Bcep18194_B1816
|
|
New product name: putative protein tyrosine kinase. New product name confidence: Class 3. New homology: 33% identity and 53% similarity to BceF [B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Based on article by Moreira, L. M. Instituto Superior Tecnico, Av. Rovisco Pais, Portugal.
|
| Aug 1, 2008 |
Bcen_1156
|
|
New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1636
|
|
New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4782
|
|
New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 96% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1533
|
|
New product name: putative iron transport-related membrane protein, OrbD. New product name confidence: Class 3. New homology: 93% identity to putative iron transport-related membrane protein, OrbD[B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1638
|
|
New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1158
|
|
New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4784
|
|
New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 94% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1535
|
|
New product name: putative iron transport-related exported protein, OrbB. New product name confidence: Class 3. New homology: 94% identity to putative iron transport-related exported protein, OrbB [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen2424_1635
|
|
New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1155
|
|
New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 97% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4781
|
|
New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 95% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1532
|
|
New product name: putative iron transport-related ATP-binding protein, OrbC. New product name confidence: Class 3. New homology: 92% identity to putative iron transport-related ATP-binding protein, OrbC [B. cenocepacia J2315]. New evidence reference (PMID): 17295049.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4780
|
|
New product name: putative dioxygenase, OrbG. New product name confidence: Class 3. New homology: 98% identity to putative dioxygenase, OrbG[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Apr 22, 2009 |
BCAS0222
|
Burkholderia cenocepacia
J2315 |
New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 94% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Apr 30, 2018 |
WQ49_RS09445
|
Burkholderia cenocepacia
K56-2 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BURCENK562V_RS32320
|
Burkholderia cenocepacia
K56-2Valvano |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
BCAS0364
|
Burkholderia cenocepacia
J2315 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Dustin Lavallee and Silvia Cardona, University of Manitoba
|
| Apr 30, 2018 |
AK34_RS09175
|
Burkholderia dolosa
AU0158 |
New product name: putative (R)-specific oxepin-CoA hydratase. New product name synonym: PaaZ-ECH. New product name confidence: Class 2. New PubMed ID: 21296885. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.
. Annotation transferred from: UniProtKB:Q5P232.
|
Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
|
| Apr 30, 2018 |
BCAL3125
|
|
New product name: pseudogene (WbxB). New product name confidence: Class 2. New PubMed ID: 15687196. New comment: Belongs to the O antigen biosynthesis gene cluster. New comment: B cenocepacia J2315, but not K56-2, is O-antigen deficient due to a transposon insertion in this gene.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM0267
|
Burkholderia cenocepacia
J2315 |
New product name: porin. New product name confidence: Class 1. New PubMed ID: 14977960.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 22, 2009 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
| Apr 10, 2015 |
BMA10247_A0732
|
Burkholderia mallei
NCTC 10247 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2053
|
Burkholderia mallei
NCTC 10229 |
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1551
|
|
New product name: Oxygen-regulated invasion protein OrgA. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB5.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|