Log of Annotation Updates

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Date Locus Tag Strain Description Submitter
Sep 15, 2008 Bamb_4967 New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New homology: 97% identity to repA[B. cenocepacia AU 1054]. New evidence reference (PMID): 18328098. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
Sep 15, 2008 Bcen_5164 New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
Sep 15, 2008 Bcen2424_5695 New gene name: repA. New product name: replication protein RepA. New product name confidence: Class 1. New evidence reference (PMID): 18328098. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK.
Apr 10, 2015 BPSS1494 Burkholderia pseudomallei K96243 New gene name: regB. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1495 Burkholderia pseudomallei K96243 New gene name: regA. New product name confidence: Class 2. New PubMed ID: 17660433. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34695 Burkholderia cenocepacia K56-2Valvano New gene name: pwbC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Aug 1, 2008 Bcen2424_1645 New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 98.9% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen_1165 New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 98.9% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bamb_1542 New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 94.6% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcep18194_A4791 New gene name: pvdF. New product name: pyoverdine synthetase F. New product name confidence: Class 2. New homology: 94.2% identity to PvdF[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: pvdA. New product name confidence: Class 1. New PubMed ID: 10456885. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34705 Burkholderia cenocepacia K56-2Valvano New gene name: ptwW. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34760 Burkholderia cenocepacia K56-2Valvano New gene name: ptwV. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34700 Burkholderia cenocepacia K56-2Valvano New gene name: ptwU. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34680 Burkholderia cenocepacia K56-2Valvano New gene name: ptwN. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34785 Burkholderia cenocepacia K56-2Valvano New gene name: ptwL. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34775 Burkholderia cenocepacia K56-2Valvano New gene name: ptwK. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34645 Burkholderia cenocepacia K56-2Valvano New gene name: ptwH. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34640 Burkholderia cenocepacia K56-2Valvano New gene name: ptwG. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34665 Burkholderia cenocepacia K56-2Valvano New gene name: ptwF. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34780 Burkholderia cenocepacia K56-2Valvano New gene name: ptwE. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34840 Burkholderia cenocepacia K56-2Valvano New gene name: ptwD4. New product name: type IV secretion system-coupling protein ptwD4. New gene name synonym: trwB. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:P09130. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34755 Burkholderia cenocepacia K56-2Valvano New gene name: ptwC. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34830 Burkholderia cenocepacia K56-2Valvano New gene name: ptwC. New gene name synonym: trwC. New product name confidence: Class 2. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. .Annotation transferred from: UniProtKB:Q8PRK1. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BURCENK562V_RS34770 Burkholderia cenocepacia K56-2Valvano New gene name: ptwB. New PubMed ID: 27200362. New PubMed ID: 15342570. New PubMed ID: 19744991. New PubMed ID: 18824538. New comment: This gene is part of the B. cenocepacia K56-2 plasmid-encoded ptw type IV secretion cluster. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Aug 25, 2008 Bcep18194_C6709 New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 92% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bamb_4729 New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 89% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcenmc03_6986 Burkholderia cenocepacia MC0-3 New gene name: prnD. New product name: PrnD. New product name confidence: Class 2. New homology: 88% identity to PrnD [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcep18194_C6708 New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 97% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcenmc03_6985 Burkholderia cenocepacia MC0-3 New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 95% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bamb_4728 New gene name: prnC. New product name: PrnC. New product name confidence: Class 2. New homology: 93% identity to PrnC [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcep18194_C6707 New gene name: prnB. New product name: PrnB. New product name confidence: Class 2. New homology: 90% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bamb_4727 New gene name: prnB. New product name confidence: Class 2. New homology: 85% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcenmc03_6984 Burkholderia cenocepacia MC0-3 New gene name: prnB. New product name confidence: Class 2. New homology: 83% identity to PrnB [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcep18194_C6706 New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 94% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bcenmc03_6983 Burkholderia cenocepacia MC0-3 New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 91% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Aug 25, 2008 Bamb_4726 New gene name: prnA. New product name: tryptophan halogenase, PrnA. New product name confidence: Class 2. New homology: 90% identity to tryptophan halogenase, PrnA [B. cepacia LT-4-12W]. New evidence reference (PMID): 17905875. Literature Review. Raaijmakers, Jos M. Wageningen University, Wageningen, The Netherlands
Jan 25, 2011 BTH_II0256 Burkholderia thailandensis E264 ATCC 700388 New gene name: ppkA-6. New pathway: T6SS-6 Type VI Secretion System. New GO accession: GO:0033103 [IGC]. New evidence reference (PMID): 20865170. New genomic context: type VI secretion system gene cluster 6 (T6SS-6). Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Jan 25, 2011 BCAL2248 Burkholderia cenocepacia J2315 New gene name: pobA. New product name: Group I Sfp-type phosphopantetheinyl transferase, PobA. New product name confidence: Class 1. New pathway: pyochelin and ornibactin biosynthesis. New GO accession: GO:0033212 [IMP]. New evidence reference (PMID): 20966087. Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
Apr 20, 2020 BCAM2166 Burkholderia cenocepacia J2315 New gene name: penR. New PMID: 26416862. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 BCAM2165 Burkholderia cenocepacia J2315 New gene name: penB. New product name confidence: Class 1. New PMIDs: 26416862, 19075063. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 20, 2020 Bmul_3689 Burkholderia multivorans ATCC 17616 New gene name: penA. New product name: class A beta-lactamase, PenA. New product name confidence: Class 1. New comment: B. multivorans PenA is an inhibitor-resistant carbapenemase, whereas the B. pseudomallei PenA is an extended spectrum beta-lactamase (PMID:27620956). New PMID: 30012762. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Sep 15, 2008 Bcen_4887 New gene name: pehA. New product name: pectic hydrolase enzyme A, PehA. New product name confidence: Class 1. New subcellular localization confidence: Class 1. New homology: 84% identity to PehA [Burkholderia cepacia ATCC 25416]. New evidence reference (PMID): 17493828. New evidence reference (PMID): 17627609. Literature review. Massa, C. Structural Biology Laboratory, Trieste, Italy
Aug 1, 2008 Bcen2424_5002 New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 73% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcep18194_B0668 New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 73% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen_3365 New gene name: pchB. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis protein PchB. New homology: 70% identity to salicylate biosynthesis protein PchB[P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 11937513. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcep18194_B0667 New gene name: pchA. New product name confidence: Class 2. New homology: 48% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen2424_5003 New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Aug 1, 2008 Bcen_3364 New gene name: pchA. New product name confidence: Class 2. New alternate product name: salicylate biosynthesis isochorismate synthase. New homology: 47% identity to salicylate biosynthesis isochorismate synthase [P. aeruginosa PAO1]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 7500944. New evidence reference (PMID): 12624097. Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
Sep 15, 2008 Bcenmc03_4542 Burkholderia cenocepacia MC0-3 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 94% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 BamMC406_3107 Burkholderia ambifaria MC40-6 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcep18194_B0004 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bamb_4966 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. Cenocepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Apr 22, 2009 BCAM0004 Burkholderia cenocepacia J2315 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New homology: 92% identity to parB[B. cencoepacia AU 1054]. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Raymond C. Lo, Simon Fraser University
Sep 15, 2008 Bcen_5165 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Sep 15, 2008 Bcen2424_5694 New gene name: parB. New product name: chromosome partitioning protein ParB. New product name confidence: Class 1. New evidence reference (PMID): 18328098. New evidence reference (PMID): 16452432. Literature review. Based on article by Mahenthiralingam, E. Warwick University, Coventry, UK; Lane, D. Centre National de Recherche Scientifique, France.
Apr 30, 2018 BURCENK562V_RS03200 Burkholderia cenocepacia K56-2Valvano New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 2. New PubMed ID: 28085228. New comment: .Annotation transferred from: BGD:BCAL0788. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BCAL0788 Burkholderia cenocepacia J2315 New gene name: pagL. New product name: Lipid A deacylase PagL. New product name confidence: Class 1. New PubMed ID: 28085228. New comment: Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 AK34_RS25965 Burkholderia dolosa AU0158 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH.. Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 WQ49_RS11500 Burkholderia cenocepacia K56-2 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28560 Burkholderia cenocepacia K56-2Valvano New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0408 Burkholderia cenocepacia J2315 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BP1026B_I0260 Burkholderia pseudomallei 1026b New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BPSL3041 Burkholderia pseudomallei K96243 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 I35_RS02045 Burkholderia cenocepacia H111 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BMAA0543 Burkholderia mallei ATCC 23344 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BCEP18194_RS08230 Burkholderia lata 383 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 BTH_I2900 Burkholderia thailandensis E264 ATCC 700388 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 30, 2018 bglu_1g04490 Burkholderia glumae BGR1 New gene name: pacL. New product name: PacL. New product name synonym: putative 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. New product name confidence: Class 2. New PubMed ID: 21296885. New PubMed ID: 18776009. New comment: in E coli, paaZ encodes a bifunctional protein consisting of an N-terminal NADP-dependent aldehyde dehydrogenase domain and a C-terminal MaoC-like (R)-specific enoyl-CoA hydratase domain. In Burkholderia genomes, a gene incorrectly annotated as paaZ (e.g WQ49_RS11500) encodes only one of the two domains found in E.coli paaZ (the domain with semialdehyde dehydrogenase activity) and so is renamed PacL (PMID:21296885) but was also referred to as PaaZ-ALDH in the manuscript. In the same study , a separate A. aromaticum, protein (UniProtKB:Q5P232) with the (R)-hydratase activity was annotated as Ech-Aa and the Burkholderia ortholog was annotated as PaaZ-ECH. . Annotation transferred from: UniProtKB:Q5P3J4. Geoff Winsor, Simon Fraser University. Transferred annotation from the B. cenocepacia annotation provided by D. Lavellee and S. Cardona.
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaZ. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS04255 Burkholderia cenocepacia K56-2 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11890 Burkholderia cenocepacia K56-2Valvano New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAM1711 Burkholderia cenocepacia J2315 New gene name: paaK2. New product name: Paak2. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11520 Burkholderia cenocepacia K56-2 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28540 Burkholderia cenocepacia K56-2Valvano New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BCAL0404 Burkholderia cenocepacia J2315 New gene name: paaK1. New product name: PaaK1. New product name synonym: phenylacetate-CoA ligase. New product name confidence: Class 1. New PubMed ID: 21388965. New comment: . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11505 Burkholderia cenocepacia K56-2 New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28555 Burkholderia cenocepacia K56-2Valvano New gene name: paaJ. New product name: PaaJ. New product name synonym: putative beta-ketothiolase (3-oxo-5,6-dehydrosuberyl-CoA thiolase). New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P0C7L2. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11515 Burkholderia cenocepacia K56-2 New gene name: paaI. New product name: PaaI. New product name synonym: putative phenylacetatyl-CoA thioesterase. New product name confidence: Class 2. New PubMed ID: 16464851. New comment: . Annotation transferred from: UniProtKB:P76084. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS04260 Burkholderia cenocepacia K56-2 New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS11895 Burkholderia cenocepacia K56-2Valvano New gene name: paaH. New product name: PaaH. New product name synonym: putative 3-hydroxyadipyl-CoA dehydrogenase. New product name confidence: Class 2. New PubMed ID: 20660314. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P76083. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11510 Burkholderia cenocepacia K56-2 New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS28550 Burkholderia cenocepacia K56-2Valvano New gene name: paaG. New product name: PaaG. New product name synonym: putative 1,2-epoxyphenylacetyl-CoA isomerase/ 3,4-dehydroadipyl-CoA isomerase. New product name confidence: Class 2. New PubMed ID: 12846838. New comment: . Annotation transferred from: UniProtKB:P77467. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS11495 Burkholderia cenocepacia K56-2 New gene name: paaF. New product name: PaaF. New product name synonym: putative 2,3-dehydroadipyl-CoA hydratase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 20660314. New comment: . Annotation transferred from: UniProtKB:P76082. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS2 Burkholderia cenocepacia K56-2Valvano New gene name: paaF. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS13890 Burkholderia cenocepacia K56-2 New gene name: paaE. New product name: PaaE. New product name synonym: putative reductase subunit of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76081. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaE. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 WQ49_RS13900 Burkholderia cenocepacia K56-2 New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 BURCENK562V_RS05100 Burkholderia cenocepacia K56-2Valvano New gene name: paaC. New product name: PaaC. New product name synonym: putative subunit PaaC, structural subunit, of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 21247899. New comment: . Annotation transferred from: UniProtKB:P76079. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13905 Burkholderia cenocepacia K56-2 New gene name: paaB. New product name: PaaB. New product name synonym: putative subunit PaaB of ring 1,2-phenylacetyl-CoA epoxidase. New product name confidence: Class 2. New PubMed ID: 16997993. New comment: . Annotation transferred from: UniProtKB:P76078. Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 30, 2018 WQ49_RS13910 Burkholderia cenocepacia K56-2 New gene name: paaA. New product name: PaaA. New product name confidence: Class 1. New PubMed ID: 18776009. New PubMed ID: 21247899. New comment: Putative monooxygenase subunit of ring 1,2-phenylacetyl-CoA epoxidase . Dustin Lavallee and Silvia Cardona, University of Manitoba
Apr 10, 2015 BURCENK562V_RS0 Burkholderia cenocepacia K56-2Valvano New gene name: paaA. New product name confidence: Class 1. New PubMed ID: 18776009. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 30, 2018 BMAA1552 Burkholderia mallei ATCC 23344 New gene name: orgB. New product name: type III secretion system stator protein OrgB (T3SS-3). New gene name synonym: sctL. New product name confidence: Class 2. New PubMed ID: 28664152. New comment: This gene is part of the Burkholderia mallei type III secretion system T3SS-3 gene locus..Annotation transferred from: BGD:BPSS1552. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BTH_II0821 Burkholderia thailandensis E264 ATCC 700388 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BPSS1552 Burkholderia pseudomallei K96243 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS668_A2184 Burkholderia pseudomallei 668 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1710b_A059 Burkholderia pseudomallei 1710b New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BURPS1106A_A209 Burkholderia pseudomallei 1106a New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10247_A0731 Burkholderia mallei NCTC 10247 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
Apr 10, 2015 BMA10229_2052 Burkholderia mallei NCTC 10229 New gene name: orgB. New product name: Oxygen-regulated invasion protein OrgB. New product name confidence: Class 2. New PubMed ID: 20951592. Annotation transferred from: UniProtKB:E1WAB4. Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
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