Feb 4, 2013 |
BCAM1339
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1338
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1337
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1336
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1335
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1334
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1333
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IGC). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1332
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IMP). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1331
|
Burkholderia cenocepacia
J2315 |
New comment : Expression is regulated by c-di-GMP and the Bcam1349 protein. New GO Accession: GO:0044010(IMP). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM1330
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0044010(IMP). New PubMed reference: 23281338. New genomic context: exopolysaccharide gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM1259
|
Burkholderia cenocepacia
J2315 |
New gene name: sigJ. New product name: sigma factor 70 SigJ. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 20, 2020 |
BCAM1115
|
Burkholderia cenocepacia
J2315 |
New product name: trimeric autotransporter adhesin. New product name confidence: Class 2. New PMID: 22919579.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1011
|
Burkholderia cenocepacia
J2315 |
New gene name: bceU. New product name: acyltransferase BceU. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Since bceU is found in the genome sequences of all Bcc strains as well as in B. thailandensis, B. oklahomensis, and B. pseudomallei strains, the authors of PMID:19948863 considered it to belong as part of bce-II gene cluster.. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4480.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1010
|
Burkholderia cenocepacia
J2315 |
New gene name: bceT. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4479.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1009
|
Burkholderia cenocepacia
J2315 |
New gene name: bceS. New product name: acyltransferase BceS. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Note that another gene (BCAM1494) for a two-component sensor kinase in B. cenocepacia J2315 was also assigned the name bceS at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4477.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1008
|
Burkholderia cenocepacia
J2315 |
New gene name: bceR. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. . New comment: Note that another gene (BCAM1493) for a two-component response regulator in B. cenocepacia J2315 was also assigned the name bceR at a later date (PMID:25519693).. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4476.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1007
|
Burkholderia cenocepacia
J2315 |
New gene name: bceQ. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Disruption of the bceQ and bceR genes, in B. cepacia IST408 (PMID:19948863) resulted in the abolishment of cepacian biosynthesis. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4475.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1006
|
Burkholderia cenocepacia
J2315 |
New gene name: bceP. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4474.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1005
|
Burkholderia cenocepacia
J2315 |
New gene name: bceO. New product name: acyltransferase BceO. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4473.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1004
|
Burkholderia cenocepacia
J2315 |
New gene name: bceN. New product name: GDP-D-mannose 4,6-dehydratase BceN. New product name confidence: Class 1. New PubMed ID: 23460819. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM1003
|
Burkholderia cenocepacia
J2315 |
New gene name: bceM. New product name: GDP-6-deoxy-D-lyxo-4-hexulose reductase BceM. New PubMed ID: 19948863. New comment: Member of the bce-II gene cluster.Annotation transferred from: BGD:Bcep1808_4471.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0927
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0927
|
Burkholderia cenocepacia
J2315 |
New product name: RND-8 efflux system outer membrane protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0926
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0926
|
Burkholderia cenocepacia
J2315 |
New product name: RND-8 efflux system transporter protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0925
|
Burkholderia cenocepacia
J2315 |
New GO Accession: GO:0071236(EXP). New PubMed reference: 21781329.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0925
|
Burkholderia cenocepacia
J2315 |
New product name: RND-8 efflux system membrane fusion protein. New product name confidence: Class 1. New comment: Member of rnd-8 operon encoding Resistance-Nodulation-Cell Division (RND) efflux pump RND-8; Major RND-8 substrate is tobramycin (in biofilm grown cells). New PMIDs: 25267676, 25926825.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM0918
|
Burkholderia cenocepacia
J2315 |
New gene name: sigE. New product name: sigma factor 70 sigE. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 30, 2018 |
BCAM0865
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 19948863. New comment: Removed gene name bceL because it was incorrectly assigned in a previous study. Analysis of other Burkholderia genomes including B. phytofirmans and B. xenovorans indicated that the protein was absent from the bce cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0865
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0865
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0864
|
Burkholderia cenocepacia
J2315 |
New product name: BceK. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4210.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0864
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New GO Accession: GO:0016757(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0864
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New GO accession: GO:0016757 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0863
|
Burkholderia cenocepacia
J2315 |
New product name: BceJ. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 22919582. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4209.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0863
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New GO Accession: GO:0016757(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0863
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New GO accession: GO:0016757 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0862
|
Burkholderia cenocepacia
J2315 |
New product name: BceI. New product name confidence: Class 2. New PubMed ID: 14637140. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4208.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0862
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0862
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0861
|
Burkholderia cenocepacia
J2315 |
New product name: BceH. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4207.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0861
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New GO Accession: GO:0016757(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0861
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New GO accession: GO:0016757 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0860
|
Burkholderia cenocepacia
J2315 |
New product name: BceG. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4206.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0860
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New GO Accession: GO:0016757(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0860
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New GO accession: GO:0016757 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New product name: tyrosine autokinase BceF. New product name confidence: Class 1. New homology: 92% identity to BceF[B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 30, 2018 |
BCAM0859
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 23435894. New PubMed ID: 25486990. New PubMed ID: 26590274. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0858
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0858
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0858
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4204.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New product name: phosphotyrosine phosphatase BceD. New product name confidence: Class 1. New homology: 90% identity to BceD[ B. cepacia IST408]. New evidence reference (PMID): 17114319.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Apr 30, 2018 |
BCAM0857
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 17114319. New PubMed ID: 19948863. New PubMed ID: 26590274. New PubMed ID: 25486990. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0856
|
|
New gene name: bceD. New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New PubMed reference: 11006084. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0856
|
|
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New evidence reference (PMID): 11006084. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0856
|
|
New PubMed ID: 14637140. New PubMed ID: 15995219. New comment: Member of the bce-I gene cluster. New comment: The J2315 bceB gene nucleotide sequence exhibits a frameshift mutation which may be the cause of it's defect in cepacian EPS biosynthesis.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0855
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO Accession: GO:0045227(ISS). New PubMed reference: 14637140. New PubMed reference: 19383677. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0855
|
Burkholderia cenocepacia
J2315 |
New pathway: cepacia biosynthesis. New pathway: exopolysaccharide biosynthesis. New GO accession: GO:0045227 [ISS]. New evidence reference (PMID): 14637140. New evidence reference (PMID): 19383677. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0855
|
Burkholderia cenocepacia
J2315 |
New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0854
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 1. New pathway: cepacian biosynthesis. New pathway: exopolysaccharide biosynthesis. New EC Number: 5.3.1.8;2.7.7.22. New GO accession: GO:0045227 [ISS]. New GO accession: GO:0004476 [IDA]. New GO accession: GO:0008928 [IDA]. New GO accession: GO:0003979 [IDA]. New evidence reference (PMID): 14637140. New evidence reference (PMID): 11006084. New evidence reference (PMID): 18668237. New evidence reference (PMID): 17184737. New genomic context: Burkholderia cepacia complex (bce) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0854
|
Burkholderia cenocepacia
J2315 |
New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM0849
|
Burkholderia cenocepacia
J2315 |
New gene name: ecfL. New product name: sigma factor 70 EcfL. New product name confidence: Class 1. New evidence reference (PMID): 17784948.
|
Literature review. Raymond C. Lo, Simon Fraser University
|
Feb 4, 2013 |
BCAM0581
|
Burkholderia cenocepacia
J2315 |
New product name: bifunctional crotonase homologue. New product name confidence: Class 1. New GO Accession: GO:0016297(IDA). New GO Accession: GO:0016836(IDA). New PubMed reference: 22949660. New PubMed reference: 18049456. New PubMed reference: 22221091.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0581
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: rpfF. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 10, 2015 |
BCAM0581
|
Burkholderia cenocepacia
J2315 |
New gene name: dfsA. New product name: diffusible factor synthase A. DfsA.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0580
|
Burkholderia cenocepacia
J2315 |
New product name: Cis-2-dodecenoic acid receptor RpfR. New gene name: rpfR. New product name confidence: Class 1. New GO Accession: GO:0071111(IMP). New PubMed reference: 22949660.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0580
|
Burkholderia cenocepacia
J2315 |
New EC Number: 3.1.4.52.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0450
|
Burkholderia cenocepacia
J2315 |
New gene name: copD. New product name: CopD. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0449
|
Burkholderia cenocepacia
J2315 |
New gene name: copC. New product name: CopC. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0448
|
Burkholderia cenocepacia
J2315 |
New gene name: cusF. New product name: CusF. New product name confidence: Class 2. New PMID: 32090500.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0443
|
Burkholderia cenocepacia
J2315 |
New gene name: copR. New product name: CopR. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47456. New PMID: 11004187.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Apr 20, 2020 |
BCAM0442
|
Burkholderia cenocepacia
J2315 |
New gene name: copS. New product name: CopS. New product name confidence: Class 2. Name transferred from: UniProtKB:Q47457. New PMID: 11004187.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0393
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO Accession: GO:0008800(ISS). New PubMed reference: 9333046. New PubMed reference: 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0393
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New pathway: beta-Lactam resistance. New EC Number: 3.5.2.6. New GO accession: GO:0008800 [ISS]. New evidence reference (PMID): 9333046. New evidence reference (PMID): 18931103.
|
Literature review of BRENDA website by Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Feb 4, 2013 |
BCAM0379
|
Burkholderia cenocepacia
J2315 |
New PubMed reference: 22830644.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 22, 2009 |
BCAM0379
|
Burkholderia cenocepacia
J2315 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 19% identity to RetS [P. aeruginosa]. New evidence reference (PMID): 18316384.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
Apr 30, 2018 |
BCAM0335
|
Burkholderia cenocepacia
J2315 |
New gene name: virD4. New product name: pseudogene (virD4). New PubMed ID: 18931103. New comment: The virD4 homologue (BCAM0335) contains a frameshift mutation (PMID:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0335
|
Burkholderia cenocepacia
J2315 |
New comment : Contains frameshift mutation in J2315. New pathway: VirB4/D4 Type IV Secretion System. New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0335
|
Burkholderia cenocepacia
J2315 |
New pathway: VirB4/D4 Type IV Secretion System. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0334
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0334
|
Burkholderia cenocepacia
J2315 |
New gene name: virB11. New synonym for gene: bcvirB11. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0334
|
Burkholderia cenocepacia
J2315 |
New gene name: virB11. New alternate gene name: bcvirB11. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0333
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0333
|
Burkholderia cenocepacia
J2315 |
New gene name: virB10. New synonym for gene: bcvirB10. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0333
|
Burkholderia cenocepacia
J2315 |
New gene name: virB10. New alternate gene name: bcvirB10. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0332
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0332
|
Burkholderia cenocepacia
J2315 |
New gene name: virB9. New synonym for gene: bcvirB9. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0332
|
Burkholderia cenocepacia
J2315 |
New gene name: virB9. New alternate gene name: bcvirB9. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0331
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0331
|
Burkholderia cenocepacia
J2315 |
New gene name: virB8. New synonym for gene: bcvirB8. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0331
|
Burkholderia cenocepacia
J2315 |
New gene name: virB8. New alternate gene name: bcvirB8. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0330
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0330
|
Burkholderia cenocepacia
J2315 |
New gene name: virB7. New synonym for gene: bcvirB7. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0330
|
Burkholderia cenocepacia
J2315 |
New gene name: virB7. New alternate gene name: bcvirB7. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0329
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0329
|
Burkholderia cenocepacia
J2315 |
New gene name: virB5. New synonym for gene: bcvirB5. New pathway: VirB4/D4 Type IV Secretion System. New GO Accession: GO:0030255(IGC). New PubMed reference: 15342570. New PubMed reference: 19744991. New PubMed reference: 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Jan 25, 2011 |
BCAM0329
|
Burkholderia cenocepacia
J2315 |
New gene name: virB5. New alternate gene name: bcvirB5. New pathway: VirB4/D4 Type IV Secretion System. New GO accession: GO:0030255 [IGC]. New evidence reference (PMID): 15342570. New evidence reference (PMID): 19744991. New evidence reference (PMID): 18824538.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
Apr 30, 2018 |
BCAM0328
|
Burkholderia cenocepacia
J2315 |
New product name confidence: Class 2. New PubMed ID: 15342570. New PubMed ID: 19744991. New comment: This gene is part of the B. cenocepacia J2315 VirB-VirD-like type IV secretion system cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|