| Apr 30, 2018 |
I35_RS20355
|
Burkholderia cenocepacia
H111 |
New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS07610
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCEP18194_RS34105
|
Burkholderia lata
383 |
New gene name: bceC. New product name: UDP-Glucose Dehydrogenase BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 21602353. New PubMed ID: 20208157. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4202.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4202
|
Burkholderia vietnamiensis
G4 |
New gene name: bceC. New product name: BceC. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1834
|
Burkholderia pseudomallei
K96243 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0543
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g16530
|
Burkholderia glumae
BGR1 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_4919
|
Burkholderia multivorans
ATCC 17616 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27650
|
Burkholderia ambifaria
AMMD |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS20350
|
Burkholderia cenocepacia
H111 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS07145
|
Burkholderia dolosa
AU0158 |
New gene name: bceB. New product name: undecaprenyl-phosphate glycosyl-1-phosphate transferase BceB. New product name synonym: priming glucosyltransferase BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 15995219. New PubMed ID: 18667584. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4201.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4201
|
Burkholderia vietnamiensis
G4 |
New gene name: bceB. New product name: BceB. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS20345
|
Burkholderia cenocepacia
H111 |
New gene name: bceA. New product name: bifunctional exopolysaccharide biosynthesis protein (phosphomannose isomerase and GDP-D-mannose pyrophosphorylase) BceA. New product name confidence: Class 1. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:BCAM0854.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS07600
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: bceA. New product name: bifunctional exopolysaccharide biosynthesis protein (phosphomannose isomerase and GDP-D-mannose pyrophosphorylase) BceA. New product name confidence: Class 1. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:BCAM0854.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
AK34_RS07150
|
Burkholderia dolosa
AU0158 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1835
|
Burkholderia pseudomallei
K96243 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_II0542
|
Burkholderia thailandensis
E264 ATCC 700388 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
bglu_2g16540
|
Burkholderia glumae
BGR1 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
Bmul_4920
|
Burkholderia multivorans
ATCC 17616 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BAMB_RS27645
|
Burkholderia ambifaria
AMMD |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCEP18194_RS34115
|
Burkholderia lata
383 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New PubMed ID: 17184737. New PubMed ID: 18668237. New comment: Member of the bce-I gene cluster.Annotation transferred from: BGD:Bcep1808_4200.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
Bcep1808_4200
|
Burkholderia vietnamiensis
G4 |
New gene name: bceA. New product name: BceA. New product name confidence: Class 2. New PubMed ID: 19948863. New comment: Cepacian biosynthesis confirmed in Burkholderia vietnamiensis G4(PMID:19948863). New genomic context: bce-I gene cluster.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS0963
|
Burkholderia pseudomallei
K96243 |
New gene name: bcaB. New product name: BcaB. New product name confidence: Class 1. New PubMed ID: 25830295. New PubMed ID: 23340315.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BP1026B_II1055
|
Burkholderia pseudomallei
1026b |
New gene name: bcaB. New product name: BcaB. New product name confidence: Class 1. New PubMed ID: 23340315.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS0962
|
Burkholderia pseudomallei
K96243 |
New gene name: bcaA. New product name: Burkholderia classical autotransporter A, BcaA. New product name confidence: Class 1. New PubMed ID: 25830295. New PubMed ID: 23340315.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BP1026B_II1054
|
Burkholderia pseudomallei
1026b |
New gene name: bcaA. New product name: Burkholderia classical autotransporter A, BcaA. New product name confidence: Class 1. New PubMed ID: 23340315.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1439
|
Burkholderia pseudomallei
K96243 |
New gene name: bbfA. New product name: BbfA. New product name confidence: Class 1. New PubMed ID: 25830295. New PubMed ID: 24223950.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSL2237
|
Burkholderia pseudomallei
K96243 |
New gene name: batA. New product name: Burkholderia autotransporter A, BatA. New product name confidence: Class 1. New PubMed ID: 25830295.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1528
|
Burkholderia pseudomallei
K96243 |
New gene name: bapA. New product name: type III secretion system effector protein BapA (T3SS-3). New product name confidence: Class 1. New subcellular localization: Extracellular (Class 1). New subcellular localization evidence code (ECO): ECO:0000002. New subcellular localization PMID: 26624293. New PubMed ID: 26624293. New PubMed ID: 28664152. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: atsR. New product name: hybrid two-component system kinase-response regulator protein, AtsR. New product name confidence: Class 1. New PubMed ID: 18316384.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS17890
|
Burkholderia cenocepacia
H111 |
New gene name: atsR. New product name: hybrid two-component system kinase-response regulator protein AtsR. New product name confidence: Class 1. New PubMed ID: 22830644. New comment:
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Sep 15, 2008 |
Bcen_4800
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcen2424_3368
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcenmc03_4148
|
Burkholderia cenocepacia
MC0-3 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 82% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcep18194_B2888
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 79% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bamb_5145
|
|
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 77% identity to AtsR [B. cenocepacia J2315]. New evidence reference (PMID): 18316384.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Apr 22, 2009 |
BCAM0379
|
Burkholderia cenocepacia
J2315 |
New gene name: atsR. New product name: adherence and T6 secretion system regulator AtsR. New product name confidence: Class 1. New homology: 19% identity to RetS [P. aeruginosa]. New evidence reference (PMID): 18316384.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Apr 10, 2015 |
BCAL1929
|
Burkholderia cenocepacia
J2315 |
New gene name: arnT. New product name: aminoarabinose transferase.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22210
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnT. New product name: 4-amino-4-deoxy-L-arabinose transferase ArnT. New product name confidence: Class 2. New subcellular localization: Cytoplasmic membrane (Class 2). New subcellular localization evidence code (ECO): ECO:0000314. New subcellular localization cross-ref: BGD:BCAL1929. New subcellular localization PMID: 26030265. New PubMed ID: 22742453. New PubMed ID: 26515403. New PubMed ID: 26030265. New PubMed ID: 11535604. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1929.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1932
|
Burkholderia cenocepacia
J2315 |
New gene name: arnC. New product name: Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22195
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnC. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1932.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22200
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnB. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1931.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1934
|
Burkholderia cenocepacia
J2315 |
New gene name: arnA2. New product name: putative UDP-4′-keto-5′-carboxypentose decarboxylase. New product name confidence: Class 2.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22185
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnA2. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1934.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAL1933
|
Burkholderia cenocepacia
J2315 |
New gene name: arnA1. New product name: putative UDP-4-deoxy-4-formamido-l-arabinose formyltransferase. New product name confidence: Class 2.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS22190
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: arnA1. New product name confidence: Class 2. New PubMed ID: 22742453. New PubMed ID: 15809294. New PubMed ID: 17337576. New PubMed ID: 27597847. New comment: In PMID:27597847: arnT, arnB, arnC, arnA1, arnA2 and BURCENK562V_RS22180 ortholog BCAL1935 located in the arn gene cluster harbored significantly low frequencies of transposon insertions (TraDIS). They were therefore categorized as essential by the authors..Annotation transferred from: BGD:BCAL1933.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
C6Q10_RS14220
|
Burkholderia multivorans
AU19564 |
New gene name: ampC2. New gene name synonym: ampC. New product name: class C beta-lactamase. New product name synonym: AmpC2. New product name confidence: Class 2. New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
Bmul_6008
|
Burkholderia multivorans
ATCC 17616 |
New gene name: ampC1. New gene name synonym: ampC. New product name: class C beta-lactamase. New product name confidence: Class 1. New comment: AmpC1 from B. multivorans ATCC 17616 possesses a narrow spectrum, and the contribution of AmpC1 to _-lactam resistance appears to be negligible, yet expression of AmpC1 is regulated by _-lactam inducers including imipenem (PMID:30012762). New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
DM80_RS04270
|
Burkholderia multivorans
DDS 15A-1 |
New gene name: ampC1. New gene name synonym: ampC. New product name synonym: AmpC1. New product name confidence: Class 2. New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 20, 2020 |
BMULJ_RS27615
|
Burkholderia multivorans
ATCC 17616 |
New gene name: ampC1. New gene name synonym: ampC. New product name synonym: AmpC1. New product name confidence: Class 2. New comment: AmpC1 from B. multivorans ATCC 17616 possesses a narrow spectrum, and the contribution of AmpC1 to _-lactam resistance appears to be negligible, yet expression of AmpC1 is regulated by _-lactam inducers including imipenem (PMID:30012762). New PMID: 30012762.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURCENK562V_RS1
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: amiI. New product name confidence: Class 1. New PubMed ID: 14977960.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 25, 2008 |
Bcen2424_0980
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Aug 25, 2008 |
Bcen_0501
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Aug 25, 2008 |
Bcep18194_A4085
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Aug 25, 2008 |
Bcep1808_0897
|
Burkholderia vietnamiensis
G4 |
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 89% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Aug 25, 2008 |
Bamb_0841
|
|
New gene name: alkB. New product name: alkane hydroxylase AlkB. New product name confidence: Class 2. New homology: 86% identity to AlkB [B. cepacia RR10]. New evidence reference (PMID): 11418560.
|
Literature Review. Rojom, Fernando. Centro Nacional de Biotecnologia, Madrid, Spain
|
| Aug 25, 2008 |
Bcenmc03_6383
|
Burkholderia cenocepacia
MC0-3 |
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
| Aug 25, 2008 |
Bcen2424_5874
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
| Aug 25, 2008 |
Bcen_5510
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
| Aug 25, 2008 |
Bcep18194_C7212
|
|
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 2. New homology: 55% identity to AidA [Ralstonia solanacearum UW551]. New evidence reference (PMID): 15557647.
|
Literature Review. Eberl, Leo. University Zurich, Zurich, Switzerland
|
| Apr 10, 2015 |
BURCENK562V_RS3
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name: aidA. New product name: nematocidal protein AidA. New product name confidence: Class 1. New PubMed ID: 15557647.
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 14, 2010 |
BCAS0223
|
Burkholderia cenocepacia
J2315 |
New gene name: afcC. New product name: AfcC. New product name confidence: Class 2. New evidence reference (PMID): 9758823.
|
Eoin O'Grady, Department of Microbiology and Infectious Diseases, University of Calgary, Canada
|
| Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Sep 15, 2008 |
Bcen_5637
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Schell, M. A. University of Georgia, Athens, Georgia
|
| Sep 15, 2008 |
Bcen2424_6002
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
|
Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcenmc03_6493
|
Burkholderia cenocepacia
MC0-3 |
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 95% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bcep18194_C7411
|
|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 89% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Sep 15, 2008 |
Bamb_6150
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|
New gene name: afcA. New product name: putative amino acid activating protein. New product name confidence: Class 1. New homology: 86% identity to AfcA [B.cepacia BC11]. New evidence reference (PMID): 9758823.
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Literature review. Based on article by Schell, M. A. University of Georgia, Athens, Georgia.
|
| Apr 30, 2018 |
BCAM0581
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: rpfF. New PubMed ID: 18049456. New PubMed ID: 23231487. New PubMed ID: 25681189. New PubMed ID: 26725701. New PubMed ID: 22221091. New comment:
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BCAM2630
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: phuV. New product name confidence: Class 2. New PubMed ID: 17187664.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1529
|
Burkholderia pseudomallei
K96243 |
New gene name synonym: ipaD. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 20823511. New PubMed ID: 12410823. Annotation transferred from: UniProtKB:P18013.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BPSS1532
|
Burkholderia pseudomallei
K96243 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1710b_A057
|
Burkholderia pseudomallei
1710b |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BURPS1106A_A207
|
Burkholderia pseudomallei
1106a |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10247_A0753
|
Burkholderia mallei
NCTC 10247 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMA10229_2073
|
Burkholderia mallei
NCTC 10229 |
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA1531
|
|
New gene name synonym: ipaB. New product name confidence: Class 2. New PubMed ID: 20951592. New PubMed ID: 17367391. Annotation transferred from: UniProtKB:P18011.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0340
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS01715
|
Burkholderia cenocepacia
H111 |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28230
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name synonym: bcsM. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BCAL0352
|
Burkholderia cenocepacia
J2315 |
New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
I35_RS01775
|
Burkholderia cenocepacia
H111 |
New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BURCENK562V_RS28290
|
Burkholderia cenocepacia
K56-2Valvano |
New gene name synonym: bcsA. New product name confidence: Class 2. New PubMed ID: 18316384. New PubMed ID: 21178498. New PubMed ID: 26364149. New comment: Part of the T6SS gene cluster
|
Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL3126b
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 15687196.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2047
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
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Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2053
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2054
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2058
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAM2059
|
Burkholderia cenocepacia
J2315 |
New evidence reference (PMID): 11557147. New evidence reference (PMID): 15183868. New genomic context: type III secretion system (TTS) gene cluster.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Jan 25, 2011 |
BCAL3517
|
|
New evidence reference (PMID): 10419967.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Apr 10, 2015 |
BMAA0729
|
|
New end coordinate: 738159. New gene name: tssM. New product name confidence: Class 1. New PubMed ID: 19168747. New comment: New translation start site at 738159 bp was confirmed by immunoblot analysis and complementation studies (PMID: 19168747 ). New genomic context: T6SS-1 gene cluster.
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BPSS1546
|
Burkholderia pseudomallei
K96243 |
New end coordinate: 2101323. New product name: regulator of type III secretion system effector proteins BsaN (T3SS-3). New product name confidence: Class 2. New PubMed ID: 28664152. New PubMed ID: 25085508. New PubMed ID: 20345664. New comment: This gene is part of the type III secretion system T3SS-3 (bsa) gene locus. The original start codon (GTG) was replaced with an ATG that was 117 bp upstream of it (PMID:25085508).
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Apr 30, 2018 |
BTH_RS10711
|
Burkholderia thailandensis
E264 ATCC 700388 |
New CDS gene identified at 2571843..2572394 (+ strand). New start coordinate: 2571843. New end coordinate: 2572394. New gene name: malH. New product name: MalH. New PubMed ID: 22765305. New comment: Part of the malleilactone biosynthetic gene cluster..
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Literature review. Geoff Winsor, Brinkman Lab, Simon Fraser University, Canada
|
| Aug 1, 2008 |
Bcen2424_1632
|
|
New alternate gene name: orbS. New alternate product name: putative RNA polymerase sigma factor, OrbS. New homology: 98% identity to OrbS[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcen_1152
|
|
New alternate gene name: orbS. New alternate product name: putative RNA polymerase sigma factor, OrbS. New homology: 98% identity to OrbS[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
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Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bamb_1529
|
|
New alternate gene name: orbS. New alternate product name: putative RNA polymerase sigma factor, OrbS. New homology: 96% identity to OrbS[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Aug 1, 2008 |
Bcep18194_A4778
|
|
New alternate gene name: orbS. New alternate product name: putative RNA polymerase sigma factor, OrbS. New homology: 94% identity to OrbS[B. cenocepacia J2315]. New evidence reference (PMID): 17295049. New evidence reference (PMID): 16672617.
|
Literature review. Thomas, M. S. University of Sheffield, Sheffield, UK
|
| Feb 4, 2013 |
BCAM2549
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Outer Membrane. New subcellular localization confidence: Class 1. New PubMed reference: 8834871.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Feb 4, 2013 |
BCAS0409
|
Burkholderia cenocepacia
J2315 |
New subcellular localization: Extracellular. New subcellular localization confidence: Class 1. New GO Accession: GO:0008237(IMP). New GO Accession: GO:0015628(IMP). New PubMed reference: 22848580. New PubMed reference: 12904566. New PubMed reference: 2645209.
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Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|
| Feb 4, 2013 |
BCAL2945
|
Burkholderia cenocepacia
J2315 |
New PubMed reference: 23256532.
|
Literature review. Geoffrey L. Winsor (Brinkman Lab). Simon Fraser University, Canada
|