Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02386
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02386
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006351 | transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02386
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | bps00240 | Pyrimidine metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bps01100 | Metabolic pathways | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bps00230 | Purine metabolism | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bps03020 | RNA polymerase | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF04998 | RNA polymerase Rpb1, domain 5 | IPR007081 | RNA polymerase Rpb1, domain 5 | 771 | 1322 | 3.4E-78 |
Gene3D | G3DSA:1.10.150.390 | 1322 | 1384 | 2.6E-28 | |||
Pfam | PF00623 | RNA polymerase Rpb1, domain 2 | IPR000722 | RNA polymerase, alpha subunit | 391 | 485 | 1.5E-27 |
Gene3D | G3DSA:2.40.50.100 | 953 | 1028 | 9.2E-27 | |||
Pfam | PF04983 | RNA polymerase Rpb1, domain 3 | IPR007066 | RNA polymerase Rpb1, domain 3 | 489 | 649 | 7.2E-20 |
Pfam | PF05000 | RNA polymerase Rpb1, domain 4 | IPR007083 | RNA polymerase Rpb1, domain 4 | 679 | 768 | 6.1E-19 |
SMART | SM00663 | IPR006592 | RNA polymerase, N-terminal | 235 | 514 | 8.1E-176 | |
Gene3D | G3DSA:1.10.274.100 | IPR042102 | RNA polymerase Rpb1, domain 3 superfamily | 490 | 645 | 4.9E-36 | |
Gene3D | G3DSA:2.40.50.100 | 1158 | 1221 | 6.7E-68 | |||
Gene3D | G3DSA:1.10.132.30 | IPR038120 | RNA polymerase Rpb1, funnel domain superfamily | 646 | 795 | 1.4E-63 | |
Pfam | PF00623 | RNA polymerase Rpb1, domain 2 | IPR000722 | RNA polymerase, alpha subunit | 344 | 392 | 5.6E-8 |
CDD | cd02655 | RNAP_beta'_C | 912 | 1369 | 4.83168E-85 | ||
Pfam | PF04997 | RNA polymerase Rpb1, domain 1 | IPR007080 | RNA polymerase Rpb1, domain 1 | 16 | 342 | 6.9E-88 |
TIGRFAM | TIGR02386 | rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit | IPR012754 | DNA-directed RNA polymerase, subunit beta-prime | 19 | 1373 | 0.0 |
Gene3D | G3DSA:2.40.50.100 | 1029 | 1133 | 6.5E-29 | |||
CDD | cd01609 | RNAP_beta'_N | 17 | 818 | 0.0 | ||
Gene3D | G3DSA:1.10.1790.20 | 1142 | 1320 | 6.7E-68 | |||
SUPERFAMILY | SSF64484 | 17 | 1369 | 0.0 | |||
Gene3D | G3DSA:1.10.40.90 | 374 | 416 | 7.6E-19 | |||
Hamap | MF_01322 | DNA-directed RNA polymerase subunit beta' [rpoC]. | IPR012754 | DNA-directed RNA polymerase, subunit beta-prime | 10 | 1383 | 18.87 |
MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1412 | - |