Burkholderia pseudomallei K96243, BPSS2098 (TssD-6)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest
Locus Tag
BPSS2098
Name
TssD-6
Replicon chromosome 2
Genomic location 2839991 - 2840482 (- strand)

Cross-References

RefSeq YP_112097.1
GI 53723112
Entrez 3095171
GI 53723112
INSDC CAH39578.1
NCBI Locus Tag BPSS2098
RefSeq YP_112097.1,GeneID
UniParc UPI000043BF48
UniProtKB Acc Q63IH5
UniProtKB ID Q63IH5_BURPS
UniRef100 UniRef100_A0A069BFI9
UniRef50 UniRef50_C9Y5D8
UniRef90 UniRef90_Q2T8N7

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) -1.59
Kyte-Doolittle Hydrophobicity Value -0.234
Molecular Weight (kDa) 17130.3
Isoelectric Point (pI) 5.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 71 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG016585 (483 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BPSS2098
Search term: TssD-6

Human Homologs

References

In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433