| Strain Overview | |
|---|---|
| Organism Name | Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1 |
| Species | Burkholderia pseudomallei |
| Strain | K96243 |
| Description/Title | DNA sample from a human female participant in the dbGaP study "Framingham SHARe Peri-Aortic Fat" |
| Annotated Genes | 5935 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | European Bioinformatics Institute |
| Date Collected | 1996 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bpseudomallei | 10 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMEA1705938 |
| NCBI Taxonomy ID | 9606 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia pseudomallei K96243 chromosome 1, complete sequence. | |
| Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5935 |
| CDS | 5727 |
| pseudo | 127 |
| tRNA | 61 |
| rRNA | 12 |
| misc_RNA | 8 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2531 |
| Cytoplasmic Membrane | 1208 |
| Periplasmic | 201 |
| Outer Membrane | 141 |
| Extracellular | 508 |
| Unknown | 1505 |
| Unknown (This protein may have multiple localization sites) | 166 |
| Flagellar | 27 |
| Fimbrial | 9 |
| Host Associated | 3 |
| T3SS | 5 |
| Feature | Count |
|---|---|
| General function prediction only | 538 |
| Amino acid transport and metabolism | 474 |
| Function unknown | 466 |
| Transcription | 435 |
| Cell wall/membrane/envelope biogenesis | 337 |
| Energy production and conversion | 315 |
| Carbohydrate transport and metabolism | 304 |
| Inorganic ion transport and metabolism | 249 |
| Lipid transport and metabolism | 244 |
| Signal transduction mechanisms | 239 |
| Secondary metabolites biosynthesis, transport and catabolism | 204 |
| Coenzyme transport and metabolism | 197 |
| Translation, ribosomal structure and biogenesis | 190 |
| Intracellular trafficking, secretion, and vesicular transport | 180 |
| Posttranslational modification, protein turnover, chaperones | 169 |
| Replication, recombination and repair | 154 |
| Cell motility | 132 |
| Nucleotide transport and metabolism | 94 |
| Defense mechanisms | 62 |
| Cell cycle control, cell division, chromosome partitioning | 34 |
| Chromatin structure and dynamics | 5 |
| Extracellular structures | 2 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia pseudomallei K96243 chromosome 1, complete sequence. | 4074542 bp | 67.7% |
Replicon details
|
| Burkholderia pseudomallei K96243 chromosome 2, complete sequence. | 3173005 bp | 68.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |