Strain |
Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest |
Locus Tag |
BPSS0171
|
Name |
tssD-3
Synonym: hcp4 |
Replicon | chromosome 2 |
Genomic location | 228834 - 229319 (- strand) |
Comment | Gene is part of a cluster known as the type VI secretion system gene cluster tss-3 used in much of the early P. pseudomallei literature (PMID:17660433) but later referred to as T6SS-4 cluster later (PMID:22007185) |
RefSeq | YP_110192.1 |
GI | 53721207 |
Entrez | 3096593 |
GI | 53721207 |
INSDC | CAH37616.1 |
NCBI Locus Tag | BPSS0171 |
RefSeq | YP_110192.1,GeneID |
UniParc | UPI000043B7FB |
UniProtKB Acc | Q63NX7 |
UniProtKB ID | Q63NX7_BURPS |
UniRef100 | UniRef100_A0A069B6T4 |
UniRef50 | UniRef50_B3R2R2 |
UniRef90 | UniRef90_N0AUQ0 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
type VI secretion system protein TssD-3 (T6SS-4)
|
Synonyms |
hypothetical protein |
Evidence for Translation | |
Charge (pH 7) | -3.04 |
Kyte-Doolittle Hydrophobicity Value | -0.501 |
Molecular Weight (kDa) | 17541.5 |
Isoelectric Point (pI) | 5.66 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
4TV4 | UNKNOWN FUNCTION | 06/25/14 | Crystal structure of a Putative uncharacterized protein from Burkholderia pseudomallei | BURKHOLDERIA PSEUDOMALLEI | 2.1 | X-RAY DIFFRACTION | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 73 genera
|
Burkholderia Ortholog Group |
BG016119 (488 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BPSS0171
Search term: tssD-3
Search term: type VI secretion system protein TssD-3 (T6SS-4)
|
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages.
Shalom G, Shaw JG, Thomas MS
Microbiology 2007 Aug;153(Pt 8):2689-2699
PubMed ID: 17660433
|
Strategies for Intracellular Survival of Burkholderia pseudomallei.
Allwood EM, Devenish RJ, Prescott M, Adler B, Boyce JD
Front Microbiol 2011;2:170
PubMed ID: 22007185
|
Type VI secretion is a major virulence determinant in Burkholderia mallei.
Schell MA, Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, Chen D, Lipscomb L, Kim HS, Mrázek J, Nierman WC, Deshazer D
Mol Microbiol 2007 Jun;64(6):1466-85
PubMed ID: 17555434
|