Burkholderia cenocepacia J2315, BCAM0001 (ecfJ)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02937	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	12	91	2.51E-18
TIGRFAM	TIGR02943	Sig70_famx1: RNA polymerase sigma-70 factor, TIGR02943 family	IPR014289	RNA polymerase sigma-24-related	5	192	4.0E-86
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	122	187	4.0E-9
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	117	185	4.3E-11
Gene3D	G3DSA:1.10.1740.10				9	102	4.1E-15
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	12	77	2.0E-11
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	13	184	7.1E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.