Burkholderia cenocepacia J2315, BCAL1538 (hfq2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
EXP
Inferred from Experiment
Biological Process GO:0006979 response to oxidative stress
IPI
Inferred from Physical Interaction
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00436
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00436
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00436 RNA-binding protein Hfq [hfq]. IPR005001 RNA-binding protein Hfq 4 67 25.884
MobiDBLite mobidb-lite consensus disorder prediction 68 188 -
SUPERFAMILY SSF50182 IPR010920 LSM domain superfamily 9 66 1.0E-17
MobiDBLite mobidb-lite consensus disorder prediction 110 152 -
CDD cd01716 Hfq IPR005001 RNA-binding protein Hfq 8 66 3.62412E-27
TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq IPR005001 RNA-binding protein Hfq 10 66 1.3E-19
Gene3D G3DSA:2.30.30.100 1 70 2.8E-22
Pfam PF17209 Hfq protein IPR005001 RNA-binding protein Hfq 10 66 1.4E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.