Burkholderia cenocepacia J2315, BCAL0144 (fliA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00716	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02479	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00716	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PS00716	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj02020	Two-component system	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	94	139	6.3E-10
CDD	cd06171	Sigma70_r4			176	230	1.38717E-10
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	151	237	4.86E-21
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	40	53	1.4E-11
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	14	85	1.1E-15
ProSitePatterns	PS00716	Sigma-70 factors family signature 2.	IPR000943	RNA polymerase sigma-70	203	229	-
TIGRFAM	TIGR02479	FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family	IPR012845	RNA polymerase sigma factor, FliA/WhiG	14	233	1.8E-87
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	218	229	1.4E-11
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	3	85	6.02E-23
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	186	198	1.4E-11
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	203	218	1.4E-11
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	182	231	1.3E-14
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	12	233	4.5E-34
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	2	236	63.759
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	64	72	1.4E-11
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	40	53	-
Gene3D	G3DSA:1.10.1740.10				2	82	1.5E-28
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	86	159	2.79E-14
Gene3D	G3DSA:1.20.140.160				84	236	9.3E-45
PIRSF	PIRSF000770		IPR000943	RNA polymerase sigma-70	1	238	6.2E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.