Burkholderia dolosa AU0158, AK34_RS08900 (fixK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13545
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00042
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00092 HTH_CRP 171 234 3.94863E-16
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 170 246 4.85E-21
PRINTS PR00034 CRP bacterial regulatory protein HTH signature IPR012318 Crp-type HTH domain 214 229 3.8E-12
CDD cd00038 CAP_ED IPR000595 Cyclic nucleotide-binding domain 35 149 6.48615E-24
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 170 247 3.4E-26
ProSiteProfiles PS50042 cAMP/cGMP binding motif profile. IPR000595 Cyclic nucleotide-binding domain 35 118 11.708
PRINTS PR00034 CRP bacterial regulatory protein HTH signature IPR012318 Crp-type HTH domain 198 214 3.8E-12
SMART SM00100 IPR000595 Cyclic nucleotide-binding domain 35 156 2.7E-17
ProSitePatterns PS00042 Crp-type HTH domain signature. IPR018335 Transcription regulator HTH, Crp-type, conserved site 200 223 -
Pfam PF13545 Crp-like helix-turn-helix domain IPR012318 Crp-type HTH domain 173 245 1.6E-20
SUPERFAMILY SSF51206 IPR018490 Cyclic nucleotide-binding-like 28 166 5.37E-30
ProSiteProfiles PS51063 Crp-type HTH domain profile. IPR012318 Crp-type HTH domain 169 242 26.403
Pfam PF00027 Cyclic nucleotide-binding domain IPR000595 Cyclic nucleotide-binding domain 55 140 1.6E-18
SMART SM00419 IPR012318 Crp-type HTH domain 192 240 1.3E-16
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 48 168 1.8E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.