Burkholderia cenocepacia MC0-3, Bcenmc03_0038 (ecfM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 23 85 2.4E-14
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 96 166 1.8E-8
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 104 164 1.14E-9
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 10 103 1.02E-13
SUPERFAMILY SSF54427 IPR032710 NTF2-like domain superfamily 176 292 1.21E-15
Gene3D G3DSA:1.10.1740.10 6 88 4.5E-9
Gene3D G3DSA:3.10.450.50 169 292 2.6E-6
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 112 161 4.2E-10
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 24 164 1.6E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.