Burkholderia vietnamiensis G4, Bcep1808_5260 (cepR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50043
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00421 IPR000792 Transcription regulator LuxR, C-terminal 173 230 1.2E-24
ProSiteProfiles PS50043 LuxR-type HTH domain profile. IPR000792 Transcription regulator LuxR, C-terminal 169 234 32.25
Gene3D G3DSA:3.30.450.80 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 3 168 1.8E-52
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 169 237 9.0E-31
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 176 231 6.12529E-23
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 190 206 3.3E-12
SUPERFAMILY SSF75516 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 4 166 1.57E-40
SUPERFAMILY SSF46894 IPR016032 Signal transduction response regulator, C-terminal effector 158 237 5.44E-21
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 176 190 3.3E-12
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 175 230 3.8E-20
ProSitePatterns PS00622 LuxR-type HTH domain signature. IPR000792 Transcription regulator LuxR, C-terminal 190 217 -
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 18 157 1.3E-30
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 206 218 3.3E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.