Burkholderia cenocepacia MC0-3, Bcenmc03_3641

Gene Feature Overview

Strain	Burkholderia cenocepacia MC0-3 GCF_000019505.1|latest
Locus Tag	Bcenmc03_3641
NCBI Locus Tag	BCENMC03_RS18425
Name
Replicon	chromosome 2
Genomic location	540580 - 542631 (- strand)

Cross-References

RefSeq	WP_012338491.1
GI	170736023
Entrez	6128825
GI	170736023
INSDC	ACA92793.1
NCBI Locus Tag	BCENMC03_RS18425
NCBI Old Locus Tag	Bcenmc03_3641
RefSeq	WP_012338491.1
UniParc	UPI000170D4FC
UniProtKB Acc	B1K3S2
UniProtKB ID	B1K3S2_BURCC
UniRef100	UniRef100_A0AYZ7
UniRef50	UniRef50_A0A085FJ88
UniRef90	UniRef90_Q2T7M8

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma factor RpoD
Synonyms
Evidence for Translation
Charge (pH 7)	-36.82
Kyte-Doolittle Hydrophobicity Value	-0.586
Molecular Weight (kDa)	77109.1
Isoelectric Point (pI)	4.58

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group	BG003025 (663 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Bcenmc03_3641 Search term: RNA polymerase sigma factor RpoD

Human Homologs

References

Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability. Menard A, de Los Santos PE, Graindorge A, Cournoyer B BMC Genomics 2007 Sep 4;8:308 PubMed ID: 17784948