Burkholderia cenocepacia MC0-3, Bcenmc03_3641

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00715
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 450 517 8.0E-21
Gene3D G3DSA:1.10.220.120 IPR042189 Sigma-70 factor, region 1.1 superfamily 58 120 1.5E-24
Pfam PF03979 Sigma-70 factor, region 1.1 IPR007127 RNA polymerase sigma factor 70, region 1.1 60 139 7.3E-26
Coils Coil 55 75 -
Coils Coil 335 355 -
ProSitePatterns PS00716 Sigma-70 factors family signature 2. IPR000943 RNA polymerase sigma-70 641 667 -
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 616 669 4.0E-19
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 521 594 4.14E-18
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 156 187 3.1E-13
Pfam PF04546 Sigma-70, non-essential region IPR007631 RNA polymerase sigma factor 70, non-essential domain 197 417 3.1E-67
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 578 679 5.98E-28
Coils Coil 642 662 -
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 521 596 2.4E-29
MobiDBLite mobidb-lite consensus disorder prediction 246 273 -
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 444 669 2.9E-39
TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD IPR012760 RNA polymerase sigma factor RpoD, C-terminal 444 680 5.3E-119
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 620 632 4.9E-31
MobiDBLite mobidb-lite consensus disorder prediction 1 36 -
Coils Coil 240 267 -
CDD cd06171 Sigma70_r4 610 668 1.14695E-13
Gene3D G3DSA:1.10.601.10 171 517 5.0E-131
MobiDBLite mobidb-lite consensus disorder prediction 246 269 -
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 598 682 4.2E-36
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 656 667 4.9E-31
Coils Coil 427 454 -
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 173 515 1.27E-100
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 527 603 2.3E-25
Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. IPR028630 RNA polymerase sigma factor RpoD 44 681 42.602
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 472 485 4.9E-31
ProSitePatterns PS00715 Sigma-70 factors family signature 1. IPR000943 RNA polymerase sigma-70 472 485 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 496 504 4.9E-31
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 641 656 4.9E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.