Burkholderia glumae BGR1, bglu_2g06420 (toxC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00320 IPR001680 WD40 repeat 1 32 6.2
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. IPR017986 WD40-repeat-containing domain 485 555 8.597
Pfam PF00400 WD domain, G-beta repeat IPR001680 WD40 repeat 3 32 0.24
Pfam PF00400 WD domain, G-beta repeat IPR001680 WD40 repeat 118 155 9.7E-5
SMART SM00320 IPR001680 WD40 repeat 76 115 0.0048
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. IPR001680 WD40 repeat 1 41 11.11
SMART SM00320 IPR001680 WD40 repeat 437 476 0.53
Pfam PF00400 WD domain, G-beta repeat IPR001680 WD40 repeat 486 517 0.015
SMART SM00320 IPR001680 WD40 repeat 397 434 280.0
Pfam PF00400 WD domain, G-beta repeat IPR001680 WD40 repeat 93 115 0.048
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. IPR017986 WD40-repeat-containing domain 1 245 26.498
CDD cd00200 WD40 4 236 2.34257E-46
SUPERFAMILY SSF50978 IPR036322 WD40-repeat-containing domain superfamily 347 557 8.15E-25
SMART SM00320 IPR001680 WD40 repeat 35 73 0.0029
Gene3D G3DSA:2.130.10.10 IPR015943 WD40/YVTN repeat-like-containing domain superfamily 359 558 9.4E-21
SMART SM00320 IPR001680 WD40 repeat 197 236 0.015
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. IPR001680 WD40 repeat 41 82 10.676
Gene3D G3DSA:2.130.10.10 IPR015943 WD40/YVTN repeat-like-containing domain superfamily 200 334 2.7E-6
ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. IPR019775 WD40 repeat, conserved site 19 33 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. IPR001680 WD40 repeat 124 165 14.051
Gene3D G3DSA:2.130.10.10 IPR015943 WD40/YVTN repeat-like-containing domain superfamily 1 199 9.5E-43
SMART SM00320 IPR001680 WD40 repeat 117 156 2.9E-8
SMART SM00320 IPR001680 WD40 repeat 477 517 0.0011
SMART SM00320 IPR001680 WD40 repeat 518 559 36.0
Pfam PF00400 WD domain, G-beta repeat IPR001680 WD40 repeat 52 72 0.01
SUPERFAMILY SSF50978 IPR036322 WD40-repeat-containing domain superfamily 3 294 1.83E-46
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. IPR001680 WD40 repeat 204 245 10.241

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.