Burkholderia cenocepacia J2315, BCAS0052 (sfnR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 229 238 -
Gene3D G3DSA:1.10.10.60 264 339 3.5E-8
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 229 337 9.41E-9
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 301 335 7.3E-5
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 21 257 5.9E-70
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 40 53 -
ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. IPR025943 Sigma-54 interaction domain, ATP-binding site 2 102 117 -
Gene3D G3DSA:3.40.50.300 5 186 1.0E-65
CDD cd00009 AAA 26 180 9.51918E-24
SMART SM00382 IPR003593 AAA+ ATPase domain 36 179 4.2E-9
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 22 182 8.5E-69
Gene3D G3DSA:1.10.8.60 187 263 1.7E-21
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 16 245 63.869

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.