Burkholderia cenocepacia J2315, BCAM2704 (prpR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF06506
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02329
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000156 phosphorelay response regulator activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF06506
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019629 propionate catabolic process, 2-methylcitrate cycle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02329
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF06506
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF06506 Propionate catabolism activator IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal 18 182 4.6E-48
Gene3D G3DSA:1.10.10.60 601 638 8.3E-10
SUPERFAMILY SSF159800 2 177 8.63E-46
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 185 263 12.164
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 333 346 -
TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR 2 638 2.3E-212
Gene3D G3DSA:3.40.50.2300 4 175 9.5E-59
Gene3D G3DSA:1.10.8.60 481 566 1.3E-15
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 308 552 2.44E-66
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 532 638 1.58E-8
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 310 476 2.1E-67
Gene3D G3DSA:3.40.50.10660 72 159 9.5E-59
Gene3D G3DSA:3.40.50.300 296 480 5.6E-65
Gene3D G3DSA:3.30.450.20 178 280 1.4E-9
Pfam PF00989 PAS fold IPR013767 PAS fold 188 238 3.4E-5
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 183 244 6.28E-9
SMART SM00382 IPR003593 AAA+ ATPase domain 329 474 6.8E-13
SMART SM00091 IPR000014 PAS domain 187 253 3.1E-4
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 532 541 -
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 601 638 1.8E-9
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 309 548 64.942
CDD cd00009 AAA 316 473 3.01304E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.