Burkholderia cenocepacia J2315, BCAM2019

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00041
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 302 319 -
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 202 280 6.7E-24
SUPERFAMILY SSF51215 IPR037923 Transcription regulator HTH-like 21 106 2.88E-10
MobiDBLite mobidb-lite consensus disorder prediction 295 319 -
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 180 230 4.48E-9
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 196 279 1.6E-24
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 248 263 3.6E-5
Gene3D G3DSA:1.10.10.60 230 284 8.5E-19
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 263 279 3.6E-5
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 183 281 26.673
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 232 280 1.0E-12
Gene3D G3DSA:1.10.10.60 181 229 4.4E-10
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 233 275 -
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 23 114 4.8E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.