Burkholderia cenocepacia J2315, BCAM1429

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00346
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 17 93 2.4E-14
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 381 543 5.3E-25
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 294 370 8.7E-6
Gene3D G3DSA:3.30.450.40 IPR029016 GAF-like domain superfamily 97 293 2.7E-23
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 138 264 3.2E-7
ProSiteProfiles PS51077 IclR-type HTH domain profile. IPR005471 Transcription regulator IclR, N-terminal 19 81 13.744
SUPERFAMILY SSF55781 85 270 3.07E-27
ProSiteProfiles PS51077 IclR-type HTH domain profile. IPR005471 Transcription regulator IclR, N-terminal 303 364 9.073
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 311 354 2.4E-5
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 19 92 1.72E-11
SMART SM00346 IPR005471 Transcription regulator IclR, N-terminal 19 109 3.9E-6
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 423 544 1.6E-10
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 303 376 5.97E-8
Coils Coil 551 551 -
SUPERFAMILY SSF55781 369 549 3.53E-30
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 21 71 1.6E-10
ProSiteProfiles PS51078 IclR effector binding domain profile. IPR014757 Transcription regulator IclR, C-terminal 82 271 20.572
ProSiteProfiles PS51078 IclR effector binding domain profile. IPR014757 Transcription regulator IclR, C-terminal 365 548 18.291

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.