Burkholderia cenocepacia J2315, BCAM1352

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003887 DNA-directed DNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00483
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00870
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF89550
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00870
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.150.20 89 152 5.1E-19
Gene3D G3DSA:1.10.150.110 IPR027421 DNA polymerase lambda lyase domain superfamily 2 87 5.3E-22
SUPERFAMILY SSF47802 IPR027421 DNA polymerase lambda lyase domain superfamily 2 81 1.31E-18
SMART SM00278 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 94 113 1.8
SMART SM00481 IPR003141 Polymerase/histidinol phosphatase, N-terminal 341 419 6.5E-9
Pfam PF14716 Helix-hairpin-helix domain IPR010996 DNA polymerase beta-like, N-terminal domain 5 74 4.8E-20
PRINTS PR00870 DNA-polymerase family X pol beta-like signature IPR002008 DNA polymerase family X, beta-like 187 206 4.8E-8
SMART SM00278 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 129 148 350.0
SMART SM00278 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 54 73 200.0
CDD cd00141 NT_POLXc IPR002054 DNA-directed DNA polymerase X 6 316 3.43298E-94
SUPERFAMILY SSF89550 IPR016195 Polymerase/histidinol phosphatase-like 341 571 2.62E-40
SMART SM00483 IPR002054 DNA-directed DNA polymerase X 3 317 1.3E-25
PRINTS PR00870 DNA-polymerase family X pol beta-like signature IPR002008 DNA polymerase family X, beta-like 61 78 4.8E-8
Gene3D G3DSA:3.30.210.10 IPR037160 DNA polymerase, thumb domain superfamily 264 328 2.9E-23
Pfam PF14520 Helix-hairpin-helix domain 95 150 8.4E-8
Gene3D G3DSA:3.30.460.10 159 263 4.1E-25
SUPERFAMILY SSF158702 70 149 7.06E-7
Pfam PF14791 DNA polymerase beta thumb IPR029398 DNA polymerase beta, thumb domain 257 317 2.8E-17
PIRSF PIRSF005047 IPR022311 Uncharacterised conserved protein UCP005047, YshC 3 574 2.1E-201
SUPERFAMILY SSF81301 161 317 6.54E-39
CDD cd07436 PHP_PolX 335 570 2.6359E-91
Gene3D G3DSA:3.20.20.140 329 575 2.3E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.