Burkholderia cenocepacia J2315, BCAM1259 (sigJ)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00046	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF03979	Sigma-70 factor, region 1.1	IPR007127	RNA polymerase sigma factor 70, region 1.1	17	67	8.0E-10
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	348	419	6.98E-10
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	271	496	3.7E-32
Gene3D	G3DSA:1.10.601.10				103	241	1.1E-14
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	104	345	1.22E-51
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	424	508	5.3E-22
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	299	312	2.7E-19
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	467	482	2.7E-19
Gene3D	G3DSA:1.10.220.120		IPR042189	Sigma-70 factor, region 1.1 superfamily	13	69	3.2E-10
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	357	429	5.7E-14
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	409	500	6.35E-19
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	105	136	7.8E-9
Coils	Coil				482	502	-
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	443	494	1.4E-12
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	323	331	2.7E-19
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	299	312	-
Gene3D	G3DSA:1.10.601.10				242	347	4.6E-47
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	482	493	2.7E-19
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	348	422	9.1E-15
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	276	345	5.4E-23
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	446	458	2.7E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.