Burkholderia cenocepacia J2315, BCAM1023 (selB)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00475	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0001514	selenocysteine incorporation	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00475	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003924	GTPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00315	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0005737	cytoplasm	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00475	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005525	GTP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00475	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003746	translation elongation factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR00475	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF46785		IPR036390	Winged helix DNA-binding domain superfamily	436	506	1.2E-15
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	572	632	1.1E-21
SUPERFAMILY	SSF50465		IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	269	365	7.48E-21
Pfam	PF09107	Elongation factor SelB, winged helix	IPR015191	Translation elongation factor SelB, winged helix, type 3	590	630	5.9E-16
CDD	cd03696	SelB_II			179	261	1.26686E-27
Pfam	PF09106	Elongation factor SelB, winged helix	IPR015190	Translation elongation factor SelB, winged helix, type 2	446	501	1.1E-17
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	IPR000795	Transcription factor, GTP-binding domain	1	173	38.451
TIGRFAM	TIGR00475	selB: selenocysteine-specific translation elongation factor	IPR004535	Translation elongation factor, selenocysteine-specific	1	630	9.8E-136
PRINTS	PR00315	GTP-binding elongation factor signature	IPR000795	Transcription factor, GTP-binding domain	2	15	1.5E-5
Gene3D	G3DSA:1.10.10.2770				437	570	4.3E-26
PRINTS	PR00315	GTP-binding elongation factor signature	IPR000795	Transcription factor, GTP-binding domain	54	64	1.5E-5
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	2	194	1.07E-37
CDD	cd04171	SelB			2	173	1.53074E-88
Gene3D	G3DSA:2.40.30.10				177	287	7.7E-28
Pfam	PF00009	Elongation factor Tu GTP binding domain	IPR000795	Transcription factor, GTP-binding domain	2	136	6.1E-28
Pfam	PF03144	Elongation factor Tu domain 2	IPR004161	Translation elongation factor EFTu-like, domain 2	193	259	3.1E-10
CDD	cd15491	selB_III			268	352	5.22386E-33
Gene3D	G3DSA:3.40.50.300				13	176	1.0E-42
SUPERFAMILY	SSF46785		IPR036390	Winged helix DNA-binding domain superfamily	576	632	6.8E-11
ProSitePatterns	PS00301	Translational (tr)-type guanine nucleotide-binding (G) domain signature.	IPR031157	Tr-type G domain, conserved site	26	41	-
SUPERFAMILY	SSF46785		IPR036390	Winged helix DNA-binding domain superfamily	509	570	4.42E-16
SUPERFAMILY	SSF50447		IPR009000	Translation protein, beta-barrel domain superfamily	174	261	8.73E-21
PRINTS	PR00315	GTP-binding elongation factor signature	IPR000795	Transcription factor, GTP-binding domain	70	81	1.5E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.