Burkholderia cenocepacia J2315, BCAL2927 (rimM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00014
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043022 ribosome binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00014
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00014
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01782 RimM N-terminal domain IPR002676 RimM, N-terminal 54 139 1.0E-22
SUPERFAMILY SSF50447 IPR009000 Translation protein, beta-barrel domain superfamily 51 141 8.12E-16
Gene3D G3DSA:2.30.30.240 143 226 7.4E-27
Pfam PF05239 PRC-barrel domain IPR027275 PRC-barrel domain 146 221 1.5E-8
SUPERFAMILY SSF50346 IPR011033 PRC-barrel-like superfamily 148 225 4.12E-17
TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM IPR011961 16S rRNA processing protein RimM 53 225 2.2E-38
Hamap MF_00014 Ribosome maturation factor RimM [rimM]. IPR011961 16S rRNA processing protein RimM 52 226 22.332
Gene3D G3DSA:2.40.30.60 IPR036976 RimM, N-terminal domain superfamily 43 142 1.0E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.