Burkholderia cenocepacia J2315, BCAL2348 (pnp)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46915
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF005499
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00013
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj00240 Pyrimidine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj00230 Purine metabolism 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46915 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily 239 326 1.39E-16
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 147 210 9.7E-12
SMART SM00316 IPR022967 RNA-binding domain, S1 625 695 3.0E-24
Gene3D G3DSA:3.30.1370.10 IPR036612 K Homology domain, type 1 superfamily 555 626 5.2E-21
SMART SM00322 IPR004087 K Homology domain 557 622 7.9E-14
Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain 242 325 2.9E-17
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 466 534 1.2E-4
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 329 461 3.5E-23
SUPERFAMILY SSF55666 IPR036345 Exoribonuclease, PH domain 2 superfamily 455 553 6.03E-28
Gene3D G3DSA:3.30.230.70 IPR027408 PNPase/RNase PH domain superfamily 1 229 2.9E-79
CDD cd02393 PNPase_KH 558 618 1.68926E-24
PIRSF PIRSF005499 IPR012162 Polyribonucleotide nucleotidyltransferase 1 713 3.5E-299
CDD cd11363 RNase_PH_PNPase_1 6 233 3.67067E-125
SUPERFAMILY SSF54791 IPR036612 K Homology domain, type 1 superfamily 559 645 2.5E-23
CDD cd11364 RNase_PH_PNPase_2 328 547 2.13447E-151
SUPERFAMILY SSF55666 IPR036345 Exoribonuclease, PH domain 2 superfamily 145 235 2.38E-29
CDD cd04472 S1_PNPase 627 693 2.86004E-31
Gene3D G3DSA:3.30.230.70 IPR027408 PNPase/RNase PH domain superfamily 234 554 1.2E-117
Gene3D G3DSA:2.40.50.140 627 698 5.4E-27
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 624 695 2.4E-17
ProSiteProfiles PS50084 Type-1 KH domain profile. 558 617 14.445
Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. IPR012162 Polyribonucleotide nucleotidyltransferase 3 698 30.087
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 299 493 2.08E-50
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 15 144 4.1E-20
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 2 144 1.01E-50
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 625 704 4.93E-21
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 627 695 21.461
Pfam PF00013 KH domain IPR004088 K Homology domain, type 1 561 619 8.2E-11
TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase IPR012162 Polyribonucleotide nucleotidyltransferase 10 696 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.