Burkholderia cenocepacia J2315, BCAL2071 (smpB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003723 | RNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:cd09294
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd09294 | SmpB | IPR000037 | SsrA-binding protein | 6 | 122 | 4.58739E-63 |
| ProSitePatterns | PS01317 | SsrA-binding protein. | IPR020081 | SsrA-binding protein, conserved site | 21 | 33 | - |
| Hamap | MF_00023 | SsrA-binding protein [smpB]. | IPR000037 | SsrA-binding protein | 1 | 148 | 72.269 |
| Gene3D | G3DSA:2.40.280.10 | IPR023620 | Small protein B | 1 | 124 | 1.3E-47 | |
| Pfam | PF01668 | SmpB protein | IPR000037 | SsrA-binding protein | 3 | 145 | 2.0E-58 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 148 | - | ||
| SUPERFAMILY | SSF74982 | IPR023620 | Small protein B | 3 | 127 | 6.67E-50 | |
| TIGRFAM | TIGR00086 | smpB: SsrA-binding protein | IPR000037 | SsrA-binding protein | 3 | 144 | 8.5E-54 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.