Burkholderia cenocepacia J2315, BCAL1892 (rpoS)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	115	349	1.0E-33
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	193	275	3.88E-7
Hamap	MF_00959	RNA polymerase sigma factor RpoS [rpoS].	IPR012761	RNA polymerase sigma factor RpoS	3	362	38.357
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	144	157	1.1E-23
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	201	282	5.0E-7
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	193	276	5.0E-13
ProSitePatterns	PS00716	Sigma-70 factors family signature 2.	IPR000943	RNA polymerase sigma-70	321	347	-
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	168	176	1.1E-23
CDD	cd06171	Sigma70_r4			291	348	1.72024E-9
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	259	356	2.29E-24
Gene3D	G3DSA:1.10.601.10				4	192	5.4E-50
TIGRFAM	TIGR02394	rpoS_proteo: RNA polymerase sigma factor RpoS	IPR012761	RNA polymerase sigma factor RpoS	73	361	4.7E-140
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	300	312	1.1E-23
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	120	189	8.5E-20
MobiDBLite	mobidb-lite	consensus disorder prediction			1	69	-
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	278	353	1.5E-19
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	336	347	1.1E-23
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	82	190	4.08E-44
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	296	348	7.8E-17
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	321	336	1.1E-23
Coils	Coil				322	342	-
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	82	115	4.2E-8
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	144	157	-
MobiDBLite	mobidb-lite	consensus disorder prediction			42	68	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.