Burkholderia cenocepacia J2315, BCAL1856 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDS00029
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018339 peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006400 tRNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00089
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0035596 methylthiotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS51449
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SFLD SFLDF00274 ribosomal protein S12 methylthiotransferase (RimO-like) IPR005840 Ribosomal protein S12 methylthiotransferase RimO 2 453 0.0
Gene3D G3DSA:2.40.50.140 389 453 1.2E-22
SMART SM00729 IPR006638 Elp3/MiaB/NifB 141 374 4.5E-49
Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. IPR005840 Ribosomal protein S12 methylthiotransferase RimO 5 453 61.379
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 147 332 1.8E-29
Gene3D G3DSA:3.40.50.12160 IPR038135 Methylthiotransferase, N-terminal domain superfamily 6 129 6.5E-26
SFLD SFLDG01082 B12-binding domain containing 116 350 2.3E-22
ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. IPR020612 Methylthiotransferase, conserved site 145 165 -
CDD cd01335 Radical_SAM 145 361 3.54617E-9
TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO IPR005840 Ribosomal protein S12 methylthiotransferase RimO 6 451 1.1E-169
Pfam PF00919 Uncharacterized protein family UPF0004 IPR013848 Methylthiotransferase, N-terminal 6 85 5.9E-19
Pfam PF18693 TRAM domain IPR041582 RimO, TRAM domain 388 453 3.3E-23
ProSiteProfiles PS50926 TRAM domain profile. IPR002792 TRAM domain 385 453 15.588
SUPERFAMILY SSF102114 117 379 1.44E-50
Gene3D G3DSA:3.80.30.20 IPR023404 Radical SAM, alpha/beta horseshoe 139 388 4.0E-69
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 2 453 0.0
ProSiteProfiles PS51449 Methylthiotransferase N-terminal domain profile. IPR013848 Methylthiotransferase, N-terminal 5 120 24.324
TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family IPR005839 Methylthiotransferase 6 451 7.7E-101

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.