Burkholderia cenocepacia J2315, BCAL1802
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00354
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SM00354
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13377 | Periplasmic binding protein-like domain | 180 | 345 | 3.8E-17 | ||
| SUPERFAMILY | SSF53822 | IPR028082 | Periplasmic binding protein-like I | 69 | 331 | 3.26E-48 | |
| Gene3D | G3DSA:3.40.50.2300 | 73 | 337 | 8.0E-52 | |||
| CDD | cd01392 | HTH_LacI | IPR000843 | LacI-type HTH domain | 16 | 67 | 4.7585E-14 |
| Gene3D | G3DSA:1.10.260.40 | 9 | 68 | 8.2E-19 | |||
| Gene3D | G3DSA:3.40.50.2300 | 171 | 342 | 8.0E-52 | |||
| ProSiteProfiles | PS50932 | LacI-type HTH domain profile. | IPR000843 | LacI-type HTH domain | 12 | 67 | 26.915 |
| SUPERFAMILY | SSF47413 | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 11 | 69 | 4.64E-13 | |
| SMART | SM00354 | IPR000843 | LacI-type HTH domain | 11 | 82 | 1.1E-24 | |
| Pfam | PF00356 | Bacterial regulatory proteins, lacI family | IPR000843 | LacI-type HTH domain | 13 | 59 | 8.5E-13 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.