Burkholderia cenocepacia J2315, BCAL1656 (ssuR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0051176 positive regulation of sulfur metabolic process
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 16997956 Reviewed by curator
Molecular Function GO:0044212 transcription regulatory region DNA binding
IDA
Inferred from Direct Assay 		ECO:0000096
electrophoretic mobility shift assay evidence		 16997956 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 4 63 2.1E-13
Gene3D G3DSA:3.40.190.10 93 300 6.9E-98
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 30 40 1.6E-6
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 294 1.8E-40
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 19 30 1.6E-6
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 1 86 1.7E-17
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 1 88 6.39E-14
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 22.657
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 40 51 1.6E-6
Gene3D G3DSA:3.40.190.10 167 267 6.9E-98
CDD cd08413 PBP2_CysB_like IPR037423 HTH-type transcriptional regulator CysB, PBP2 domain 94 291 4.20796E-124
SUPERFAMILY SSF53850 90 297 5.0E-42

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.