Burkholderia cenocepacia J2315, BCAL0983 (rluC2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 29 75 6.9E-7
Gene3D G3DSA:3.10.290.10 IPR036986 RNA-binding S4 domain superfamily 17 80 1.8E-13
TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family IPR006225 Pseudouridine synthase, RluC/RluD 25 327 5.3E-80
CDD cd02869 PseudoU_synth_RluCD_like IPR006145 Pseudouridine synthase, RsuA/RluA 109 301 2.13344E-62
SMART SM00363 IPR002942 RNA-binding S4 domain 29 88 5.2E-6
Gene3D G3DSA:3.30.2350.10 101 330 1.6E-74
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA 109 260 1.6E-25
ProSiteProfiles PS50889 S4 RNA-binding domain profile. IPR002942 RNA-binding S4 domain 29 83 10.959
CDD cd00165 S4 IPR002942 RNA-binding S4 domain 29 112 3.76482E-6
SUPERFAMILY SSF55174 28 79 1.62E-7
SUPERFAMILY SSF55120 IPR020103 Pseudouridine synthase, catalytic domain superfamily 94 328 3.84E-63
ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. IPR006224 Pseudouridine synthase, RluC/RluD, conserved site 147 161 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.