Burkholderia cenocepacia J2315, BCAL0259 (rpsD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015935 small ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 IPR005709 Ribosomal protein S4, bacterial-type 3 207 2.1E-79
Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. IPR005709 Ribosomal protein S4, bacterial-type 1 207 35.665
MobiDBLite mobidb-lite consensus disorder prediction 31 55 -
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 98 144 5.6E-18
Gene3D G3DSA:1.10.1050.10 6 207 1.1E-79
Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain IPR001912 Ribosomal protein S4/S9, N-terminal 3 96 4.1E-32
CDD cd00165 S4 IPR002942 RNA-binding S4 domain 98 158 5.49018E-17
SMART SM01390 IPR001912 Ribosomal protein S4/S9, N-terminal 3 96 1.4E-48
Gene3D G3DSA:3.10.290.10 IPR036986 RNA-binding S4 domain superfamily 96 192 1.1E-79
SMART SM00363 IPR002942 RNA-binding S4 domain 97 161 1.1E-16
SUPERFAMILY SSF55174 2 207 7.59E-68
ProSiteProfiles PS50889 S4 RNA-binding domain profile. IPR002942 RNA-binding S4 domain 97 160 15.479
ProSitePatterns PS00632 Ribosomal protein S4 signature. IPR018079 Ribosomal protein S4, conserved site 95 119 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.