Burkholderia cenocepacia J2315, BCAL0240 (rpsC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015935 small ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01309_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01309_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01309_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50823
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02412 30S_S3_KH 2 109 6.95293E-51
Pfam PF07650 KH domain IPR004044 K Homology domain, type 2 39 110 1.8E-21
SUPERFAMILY SSF54814 IPR009019 K homology domain superfamily, prokaryotic type 2 106 7.06E-38
ProSitePatterns PS00548 Ribosomal protein S3 signature. IPR018280 Ribosomal protein S3, conserved site 163 197 -
SUPERFAMILY SSF54821 IPR036419 Ribosomal protein S3, C-terminal domain superfamily 108 206 2.35E-39
ProSiteProfiles PS50823 Type-2 KH domain profile. IPR004044 K Homology domain, type 2 39 107 18.816
TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 IPR005704 Ribosomal protein S3, bacterial-type 1 209 1.5E-92
MobiDBLite mobidb-lite consensus disorder prediction 218 266 -
Gene3D G3DSA:3.30.300.20 IPR015946 K homology domain-like, alpha/beta 17 107 3.2E-29
Pfam PF00189 Ribosomal protein S3, C-terminal domain IPR001351 Ribosomal protein S3, C-terminal 120 202 6.3E-40
SMART SM00322 IPR004087 K Homology domain 60 125 4.6E-9
MobiDBLite mobidb-lite consensus disorder prediction 218 244 -
Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. IPR005704 Ribosomal protein S3, bacterial-type 1 206 38.732
ProSiteProfiles PS50084 Type-1 KH domain profile. 61 98 8.219
Gene3D G3DSA:3.30.1140.32 IPR036419 Ribosomal protein S3, C-terminal domain superfamily 108 208 6.5E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.