Burkholderia cenocepacia J2315, BCAL0237 (rplB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0015934 large ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01171
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00467
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01171
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00467
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01171
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS00467
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002158 IPR002171 Ribosomal protein L2 9 275 1.2E-101
Pfam PF00181 Ribosomal Proteins L2, RNA binding domain IPR022666 Ribosomal Proteins L2, RNA binding domain 42 117 2.6E-33
Pfam PF03947 Ribosomal Proteins L2, C-terminal domain IPR022669 Ribosomal protein L2, C-terminal 126 250 2.6E-56
SMART SM01383 IPR002171 Ribosomal protein L2 42 118 7.8E-46
SUPERFAMILY SSF50104 IPR008991 Translation protein SH3-like domain superfamily 127 272 1.68E-60
Gene3D G3DSA:2.30.30.30 IPR014722 Ribosomal protein L2, domain 2 118 195 1.9E-31
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 2 124 1.1E-47
Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. IPR005880 Ribosomal protein L2, bacterial/organellar-type 1 273 46.274
ProSitePatterns PS00467 Ribosomal protein L2 signature. IPR022671 Ribosomal protein L2, conserved site 218 229 -
MobiDBLite mobidb-lite consensus disorder prediction 228 275 -
SMART SM01382 IPR022669 Ribosomal protein L2, C-terminal 124 252 1.7E-89
Gene3D G3DSA:4.10.950.10 IPR014726 Ribosomal protein L2, domain 3 196 274 3.3E-36
Gene3D G3DSA:2.40.50.140 1 114 2.6E-47
MobiDBLite mobidb-lite consensus disorder prediction 35 51 -
MobiDBLite mobidb-lite consensus disorder prediction 35 59 -
TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 IPR005880 Ribosomal protein L2, bacterial/organellar-type 3 273 9.3E-129

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.