Burkholderia cenocepacia J2315, BCAL0228 (recQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009432 SOS response
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01389
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00614
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043138 3'-5' DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01389
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004386 helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00614
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50967
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS51192 Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001 Helicase superfamily 1/2, ATP-binding domain 25 197 22.279
TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial 6 613 3.2E-238
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 21 180 2.5E-19
Pfam PF09382 RQC domain IPR018982 RQC domain 407 522 1.1E-38
SMART SM00490 IPR001650 Helicase, C-terminal 251 332 1.6E-24
SMART SM00487 IPR014001 Helicase superfamily 1/2, ATP-binding domain 13 213 5.8E-28
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 342 529 2.1E-48
Pfam PF16124 RecQ zinc-binding IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain 344 405 1.8E-18
MobiDBLite mobidb-lite consensus disorder prediction 520 535 -
CDD cd18794 SF2_C_RecQ 205 341 4.16409E-57
ProSiteProfiles PS50967 HRDC domain profile. IPR002121 HRDC domain 542 615 22.949
Pfam PF00570 HRDC domain IPR002121 HRDC domain 546 612 3.3E-22
Gene3D G3DSA:3.40.50.300 1 203 1.8E-78
SUPERFAMILY SSF47819 IPR010997 HRDC-like superfamily 540 614 4.14E-21
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 239 331 1.2E-14
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 203 463 2.12E-57
Gene3D G3DSA:3.40.50.300 204 341 1.2E-37
MobiDBLite mobidb-lite consensus disorder prediction 520 540 -
Gene3D G3DSA:1.10.150.80 546 614 9.3E-22
SMART SM00956 IPR018982 RQC domain 412 519 3.5E-52
TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589 DNA helicase, ATP-dependent, RecQ type 6 466 3.7E-148
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 200 2.62E-41
ProSiteProfiles PS51194 Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650 Helicase, C-terminal 218 373 18.058
CDD cd17920 DEXHc_RecQ 5 204 2.4176E-103
SMART SM00341 IPR002121 HRDC domain 542 615 1.2E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.