Burkholderia cenocepacia J2315, BCAL0156

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50956 AsnC-type HTH domain profile. IPR000485 AsnC-type HTH domain 7 68 36.716
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 66 5.0E-17
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 8 57 6.5E-22
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 23 34 1.7E-13
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 34 53 1.7E-13
ProSitePatterns PS00519 AsnC-type HTH domain signature. IPR019885 Transcription regulator HTH, AsnC-type, conserved site 25 51 -
Pfam PF13412 Winged helix-turn-helix DNA-binding 7 54 9.2E-16
Gene3D G3DSA:3.30.70.920 58 153 5.3E-28
SUPERFAMILY SSF54909 IPR011008 Dimeric alpha-beta barrel 67 156 9.79E-23
CDD cd00090 HTH_ARSR IPR011991 ArsR-like helix-turn-helix domain 13 56 1.43461E-6
Pfam PF01037 Lrp/AsnC ligand binding domain IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain 74 147 2.2E-25
SMART SM00344 IPR019888 Transcription regulator AsnC-type 7 116 2.3E-44
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 7 23 1.7E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.