Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF00140 | Sigma-70 factor, region 1.2 | IPR009042 | RNA polymerase sigma-70 region 1.2 | 39 | 66 | 4.4E-7 |
ProSitePatterns | PS00715 | Sigma-70 factors family signature 1. | IPR000943 | RNA polymerase sigma-70 | 100 | 113 | - |
TIGRFAM | TIGR02392 | rpoH_proteo: alternative sigma factor RpoH | IPR012759 | RNA polymerase sigma factor RpoH, proteobacteria | 37 | 308 | 1.6E-123 |
Hamap | MF_00961 | RNA polymerase sigma factor RpoH [rpoH]. | IPR012759 | RNA polymerase sigma factor RpoH, proteobacteria | 18 | 309 | 52.887 |
TIGRFAM | TIGR02937 | sigma70-ECF: RNA polymerase sigma factor, sigma-70 family | IPR014284 | RNA polymerase sigma-70 like domain | 71 | 307 | 9.9E-31 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 124 | 132 | 2.5E-16 |
Coils | Coil | 177 | 197 | - | |||
SUPERFAMILY | SSF88946 | IPR013325 | RNA polymerase sigma factor, region 2 | 38 | 145 | 2.62E-40 | |
CDD | cd06171 | Sigma70_r4 | 246 | 304 | 2.39899E-8 | ||
SUPERFAMILY | SSF88659 | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 211 | 309 | 4.86E-15 | |
Gene3D | G3DSA:1.10.601.10 | 35 | 148 | 1.6E-30 | |||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 100 | 113 | 2.5E-16 |
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 277 | 292 | 2.5E-16 |
ProSitePatterns | PS00716 | Sigma-70 factors family signature 2. | IPR000943 | RNA polymerase sigma-70 | 277 | 303 | - |
Pfam | PF04545 | Sigma-70, region 4 | IPR007630 | RNA polymerase sigma-70 region 4 | 249 | 304 | 2.7E-13 |
Gene3D | G3DSA:1.20.140.160 | 150 | 310 | 4.4E-15 | |||
PRINTS | PR00046 | Major sigma-70 factor signature | IPR000943 | RNA polymerase sigma-70 | 292 | 303 | 2.5E-16 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 76 | 145 | 5.0E-18 |