Burkholderia cenocepacia MC0-3, Bcenmc03_0240

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004888	transmembrane signaling receptor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00260	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00283	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016021	integral component of membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06225	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006935	chemotaxis	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00260	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00283	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcm02020	Two-component system	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	bcm02030	Bacterial chemotaxis	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	61	76	2.3E-60
ProSiteProfiles	PS50885	HAMP domain profile.	IPR003660	HAMP domain	215	267	9.461
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	443	472	2.3E-60
CDD	cd11386	MCP_signal			295	486	2.98991E-54
CDD	cd00181	Tar_Tsr_LBD	IPR003122	Chemotaxis methyl-accepting receptor Tar-related, ligand-binding	45	174	9.80845E-13
ProSiteProfiles	PS50111	Bacterial chemotaxis sensory transducers domain profile.	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	272	501	51.46
Pfam	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	327	483	1.5E-52
Pfam	PF02203	Tar ligand binding domain homologue	IPR003122	Chemotaxis methyl-accepting receptor Tar-related, ligand-binding	1	176	4.5E-46
SUPERFAMILY	SSF58104				235	516	1.07E-72
Gene3D	G3DSA:1.20.120.30				23	165	9.8E-7
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	289	318	2.3E-60
Gene3D	G3DSA:1.10.287.950				215	517	1.1E-89
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	366	393	2.3E-60
MobiDBLite	mobidb-lite	consensus disorder prediction			588	657	-
SUPERFAMILY	SSF47170		IPR035440	Methyl-accepting chemotaxis protein, four helix bundle domain superfamily	26	179	9.16E-23
Coils	Coil				291	311	-
CDD	cd06225	HAMP	IPR003660	HAMP domain	217	261	1.72388E-6
SMART	SM00304		IPR003660	HAMP domain	215	267	8.9E-10
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	213	262	2.5E-8
SMART	SM00283		IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	268	515	5.7E-91
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	395	424	2.3E-60

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.