Burkholderia vietnamiensis G4, Bcep1808_2350 (ecfD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF88946	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF88946	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08281	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF08281	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF88946	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd06171	Sigma70_r4			123	172	9.64505E-10
Pfam	PF08281	Sigma-70, region 4	IPR013249	RNA polymerase sigma factor 70, region 4 type 2	125	172	4.5E-17
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	7	179	1.5E-20
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	102	184	9.3E-20
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	117	180	6.17E-16
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	14	84	1.33E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.