Burkholderia thailandensis E264 ATCC 700388, BTH_I1403 (scmR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900191 negative regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 28320949 Reviewed by curator
Biological Process GO:2001171 positive regulation of ATP biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 28320949 Reviewed by curator
Biological Process GO:1900377 negative regulation of secondary metabolite biosynthetic process
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 28320949 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 5 62 1.5E-18
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 295 1.1E-41
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 4 84 7.07E-21
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 2 89 7.2E-26
SUPERFAMILY SSF53850 89 299 4.03E-42
CDD cd08422 PBP2_CrgA_like 92 292 1.56451E-67
Coils Coil 69 89 -
Gene3D G3DSA:3.40.190.10 92 292 7.1E-54
Gene3D G3DSA:3.40.190.10 165 268 7.1E-54
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 24.967

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.