Burkholderia pseudomallei K96243, BPSL3363
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0042597 | periplasmic space |
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0016829 | lyase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG (InterPro) | 00051 | Fructose and mannose metabolism | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| MetaCyc | alginate degradation | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF05426 | Alginate lyase | IPR008397 | Alginate lyase domain | 67 | 302 | 1.2E-43 |
| SUPERFAMILY | SSF48230 | IPR008929 | Chondroitin AC/alginate lyase | 89 | 310 | 1.74E-30 | |
| Gene3D | G3DSA:1.50.10.100 | IPR008929 | Chondroitin AC/alginate lyase | 47 | 344 | 4.8E-33 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.