Burkholderia pseudomallei K96243, BPSL3188 (rpsD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015935 small ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01017
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00165
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01390
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.10.290.10 IPR036986 RNA-binding S4 domain superfamily 96 192 9.7E-79
SMART SM00363 IPR002942 RNA-binding S4 domain 97 161 4.2E-18
Gene3D G3DSA:1.10.1050.10 6 207 9.7E-79
SMART SM01390 IPR001912 Ribosomal protein S4/S9, N-terminal 3 96 2.8E-46
TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 IPR005709 Ribosomal protein S4, bacterial-type 3 207 6.8E-79
Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain IPR001912 Ribosomal protein S4/S9, N-terminal 3 96 5.4E-31
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 98 144 1.4E-19
CDD cd00165 S4 IPR002942 RNA-binding S4 domain 98 158 4.02081E-18
SUPERFAMILY SSF55174 2 207 1.57E-67
Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. IPR005709 Ribosomal protein S4, bacterial-type 1 207 35.498
ProSitePatterns PS00632 Ribosomal protein S4 signature. IPR018079 Ribosomal protein S4, conserved site 95 119 -
ProSiteProfiles PS50889 S4 RNA-binding domain profile. IPR002942 RNA-binding S4 domain 97 160 15.798

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.