Burkholderia pseudomallei K96243, BPSL2515 (rpsA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bps03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 370 443 2.5E-18
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 114 180 9.7E-12
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 13 122 1.64E-17
Gene3D G3DSA:2.40.50.140 454 536 2.2E-20
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 264 363 1.5E-26
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 198 285 1.0E-26
CDD cd05688 S1_RPS1_repeat_ec3 200 267 2.34539E-36
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 201 269 23.328
PRINTS PR00681 Ribosomal protein S1 signature 30 48 1.2E-80
SMART SM00316 IPR022967 RNA-binding domain, S1 458 529 3.2E-19
SMART SM00316 IPR022967 RNA-binding domain, S1 28 96 0.11
Gene3D G3DSA:2.40.50.140 278 365 3.4E-29
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 286 356 21.799
PRINTS PR00681 Ribosomal protein S1 signature 117 133 1.2E-80
PRINTS PR00681 Ribosomal protein S1 signature 93 112 1.2E-80
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 440 539 3.43E-20
PRINTS PR00681 Ribosomal protein S1 signature 299 318 1.2E-80
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 459 529 2.4E-14
CDD cd05691 S1_RPS1_repeat_ec6 460 532 3.16374E-28
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 114 180 15.094
SMART SM00316 IPR022967 RNA-binding domain, S1 284 356 7.2E-25
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 351 449 3.13E-23
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 460 529 21.259
TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 IPR000110 Ribosomal protein S1 12 529 5.3E-206
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 373 443 20.021
CDD cd05689 S1_RPS1_repeat_ec4 283 354 2.30468E-41
CDD cd04465 S1_RPS1_repeat_ec2_hs2 114 180 5.61253E-29
PRINTS PR00681 Ribosomal protein S1 signature 135 152 1.2E-80
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 30 96 10.392
PRINTS PR00681 Ribosomal protein S1 signature 164 184 1.2E-80
SMART SM00316 IPR022967 RNA-binding domain, S1 371 443 2.2E-21
Gene3D G3DSA:2.40.50.140 196 277 1.6E-28
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 285 356 1.9E-21
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 28 94 6.3E-6
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 198 269 7.4E-23
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 113 193 8.92E-15
PRINTS PR00681 Ribosomal protein S1 signature 221 242 1.2E-80
PRINTS PR00681 Ribosomal protein S1 signature 339 357 1.2E-80
PRINTS PR00681 Ribosomal protein S1 signature 48 62 1.2E-80
Gene3D G3DSA:2.40.50.140 15 106 9.4E-14
SMART SM00316 IPR022967 RNA-binding domain, S1 112 180 4.4E-9
SMART SM00316 IPR022967 RNA-binding domain, S1 199 269 1.9E-29
CDD cd05687 S1_RPS1_repeat_ec1_hs1 30 96 8.32516E-15
Gene3D G3DSA:2.40.50.140 366 453 2.6E-24
PIRSF PIRSF002111 IPR000110 Ribosomal protein S1 1 546 7.1E-218
Gene3D G3DSA:2.40.50.140 107 190 1.8E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.