Burkholderia cenocepacia AU 1054, BCEN_RS32190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13377 Periplasmic binding protein-like domain 118 276 5.9E-33
Gene3D G3DSA:1.10.10.60 287 396 8.5E-24
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 344 392 1.08E-9
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 291 338 2.14E-5
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 314 392 3.5E-17
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 294 392 24.319
CDD cd01543 PBP1_XylR 12 283 1.32364E-110
SUPERFAMILY SSF53822 IPR028082 Periplasmic binding protein-like I 15 274 1.22E-34
Gene3D G3DSA:3.40.50.2300 13 275 8.7E-79
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 307 390 3.8E-22
Gene3D G3DSA:3.40.50.2300 108 283 8.7E-79

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.