Burkholderia cenocepacia AU 1054, BCEN_RS11935
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.190.10 | 162 | 260 | 6.7E-62 | |||
| Pfam | PF03466 | LysR substrate binding domain | IPR005119 | LysR, substrate-binding | 91 | 287 | 7.5E-40 |
| Pfam | PF00126 | Bacterial regulatory helix-turn-helix protein, lysR family | IPR000847 | Transcription regulator HTH, LysR | 9 | 67 | 3.5E-18 |
| CDD | cd08432 | PBP2_GcdR_TrpI_HvrB_AmpR_like | 95 | 286 | 1.2999E-75 | ||
| ProSiteProfiles | PS50931 | LysR-type HTH domain profile. | IPR000847 | Transcription regulator HTH, LysR | 6 | 63 | 24.351 |
| Gene3D | G3DSA:3.40.190.10 | 103 | 286 | 6.7E-62 | |||
| SUPERFAMILY | SSF46785 | IPR036390 | Winged helix DNA-binding domain superfamily | 4 | 87 | 1.5E-19 | |
| Gene3D | G3DSA:1.10.10.10 | IPR036388 | Winged helix-like DNA-binding domain superfamily | 7 | 96 | 4.8E-21 | |
| SUPERFAMILY | SSF53850 | 91 | 290 | 4.52E-40 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.