Burkholderia cenocepacia AU 1054, BCEN_RS11715

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 21.672
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 6 111 3.27E-19
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 3 87 6.1E-24
CDD cd08422 PBP2_CrgA_like 92 291 2.31899E-78
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 63 2.6E-16
Gene3D G3DSA:3.40.190.10 91 292 4.3E-63
SUPERFAMILY SSF53850 90 297 2.79E-46
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 90 295 8.8E-48
Gene3D G3DSA:3.40.190.10 165 266 4.3E-63

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.