Burkholderia cenocepacia AU 1054, BCEN_RS11625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 21 103 1.8E-23
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 113 338 1.2E-27
Gene3D G3DSA:3.40.190.10 225 322 1.9E-24
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 30 86 2.6E-17
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 25 134 3.65E-20
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 26 83 21.494
Gene3D G3DSA:3.40.190.10 104 199 5.8E-15
SUPERFAMILY SSF53850 112 342 8.69E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.