Burkholderia cenocepacia AU 1054, BCEN_RS11245

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02954
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00448
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 358 442 4.93E-12
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 146 374 2.24E-68
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 400 440 4.3E-10
SMART SM00382 IPR003593 AAA+ ATPase domain 166 309 7.0E-7
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 6 120 34.812
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 3 190 2.7E-39
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 7 116 1.1E-24
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 406 423 2.6E-6
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 170 183 -
Gene3D G3DSA:1.10.10.60 389 446 5.8E-15
Gene3D G3DSA:3.40.50.2300 1 131 8.2E-35
Gene3D G3DSA:3.40.50.300 133 317 2.8E-62
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 359 368 -
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 146 375 63.61
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 10 120 1.18039E-29
ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. IPR025943 Sigma-54 interaction domain, ATP-binding site 2 232 247 -
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 146 312 2.7E-66
Gene3D G3DSA:1.10.8.60 318 384 2.7E-16
CDD cd00009 AAA 147 310 3.29846E-23
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 423 443 2.6E-6
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 5 116 5.7E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.