Burkholderia cenocepacia AU 1054, BCEN_RS10835

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0001216	DNA-binding transcription activator activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02395	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04963	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02395	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF04552	Sigma-54, DNA binding domain	IPR007634	RNA polymerase sigma factor 54, DNA-binding	341	496	6.7E-66
ProSitePatterns	PS00718	Sigma-54 factors family signature 2.	IPR000394	RNA polymerase sigma factor 54	477	484	-
ProSiteProfiles	PS50044	Sigma-54 factors family profile.			350	476	48.989
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	209	226	5.3E-27
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	414	425	5.3E-27
Gene3D	G3DSA:1.10.10.1330		IPR038709	RNA polymerase sigma-54 factor, core-binding domain superfamily	139	269	2.4E-18
MobiDBLite	mobidb-lite	consensus disorder prediction			68	96	-
MobiDBLite	mobidb-lite	consensus disorder prediction			68	90	-
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	472	490	5.3E-27
Pfam	PF04963	Sigma-54 factor, core binding domain	IPR007046	RNA polymerase sigma factor 54, core-binding domain	134	325	1.5E-56
Pfam	PF00309	Sigma-54 factor, Activator interacting domain (AID)	IPR000394	RNA polymerase sigma factor 54	4	48	3.8E-14
PIRSF	PIRSF000774		IPR000394	RNA polymerase sigma factor 54	1	498	1.7E-155
PRINTS	PR00045	Sigma-54 factor signature	IPR000394	RNA polymerase sigma factor 54	398	410	5.3E-27
ProSitePatterns	PS00717	Sigma-54 factors family signature 1.	IPR000394	RNA polymerase sigma factor 54	386	405	-
Coils	Coil				338	358	-
TIGRFAM	TIGR02395	rpoN_sigma: RNA polymerase sigma-54 factor	IPR000394	RNA polymerase sigma factor 54	9	496	1.4E-141
Gene3D	G3DSA:1.10.10.60				439	496	2.7E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.